Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 105858
• Name: oriT_I4/6O|p3
• Organism: Lactococcus formosensis strain I4/6O
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP086397 (3700..3834 [+], 135 nt)
• oriT length: 135 nt
• IRs (inverted repeats): 19..26, 40..47 (AAAAGGGG..CCCCTTTT) 23..28, 37..42 (GGGGAA..TTCCCC)
• Location of nic site: 102..103
• Conserved sequence flanking the nic site: GCTTGCAGTA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 135 nt

>oriT_I4/6O|p3
ACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTACTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGATTTATATGGTCTATTTTGTT

Relaxase

Relaxase_LMK00_RS11880_I4/6O|p3

• ID: 3956
• GenBank: WP_252175974
• Name: Relaxase_LMK00_RS11880_I4/6O|p3
• UniProt ID: _
• Length: 410 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 410 a.a.
• Molecular weight: 47797.52 Da
• Isoelectric Point: 9.0551

>WP_252175974.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus formosensis]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDLSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVILEQAIEPRKSEALKRESKINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEKEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-280)

Protein structure

No available structure.

Host bacterium

• ID: 6295
• GenBank: NZ_CP086397
• Plasmid name: I4/6O|p3
• Incompatibility group: -
• Plasmid size: 7134 bp
• Coordinate of oriT [Strand]: 3700..3834 [+]
• Host baterium: Lactococcus formosensis strain I4/6O

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -