Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 105818
• Name: oriT_Chongqingii CQ16Z1|unnamed3
• Organism: Companilactobacillus futsaii strain Chongqingii CQ16Z1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP064764 (2023..2047 [+], 25 nt)
• oriT length: 25 nt
• IRs (inverted repeats): 1..9, 16..24 (TAAAGTATA..TATACTTTA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 25 nt

>oriT_Chongqingii CQ16Z1|unnamed3
TAAAGTATAGTGGGTTATACTTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_IT773_RS12880_Chongqingii CQ16Z1|unnamed3

• ID: 3928
• GenBank: WP_195702125
• Name: mobV_IT773_RS12880_Chongqingii CQ16Z1|unnamed3
• UniProt ID: _
• Length: 361 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 361 a.a.
• Molecular weight: 41902.23 Da
• Isoelectric Point: 8.3202

>WP_195702125.1 MULTISPECIES: MobV family relaxase [Lactobacillaceae]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEADTRKYFETAKQYFADNYGDENIRYAVVHLDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEELPQYLKEHGFDVERGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGRNYELKKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPEKWLERAGLKEPSKKAPKSSQELDR
HKSDELGGLHL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 6255
• GenBank: NZ_CP064764
• Plasmid name: Chongqingii CQ16Z1|unnamed3
• Incompatibility group: -
• Plasmid size: 3699 bp
• Coordinate of oriT [Strand]: 2023..2047 [+]
• Host baterium: Companilactobacillus futsaii strain Chongqingii CQ16Z1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -