Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105782
Name   oriT_pAUSMDU00010534_07 in_silico
Organism   Shigella sonnei strain AUSMDU00010534
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP045939 (2837..2928 [-], 92 nt)
oriT length   92 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 92 nt

>oriT_pAUSMDU00010534_07
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGAAAATCACGAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3910 GenBank   WP_252997079
Name   mobQ_GJE15_RS25675_pAUSMDU00010534_07 insolico UniProt ID   _
Length   712 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 712 a.a.        Molecular weight: 80397.07 Da        Isoelectric Point: 8.5924

>WP_252997079.1 MobQ family relaxase [Shigella sonnei]
MRTYTISTPFRLCAPCGAERKPQKGITAEMAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHD
YTRKSGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRE
NFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGY
QEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQNRLINRLNLEIQISRIELRNSGLTEPARR
VADLLNIVLPDNATSYTLRDIIEALPKDSNAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASL
KKSSPFSSGFSRIPLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASG
LAALRVQLLKREEELRRKEQEDTERSRAERRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYL
LLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWP
QYTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLLPTLMPVMSSVDRETRQLQLLLVMGVDDS
LGGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPL
FAAVNTPEKQPD

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(47-242)


  Protein structure



No available structure.




Host bacterium

ID   6219 GenBank   NZ_CP045939
Plasmid name   pAUSMDU00010534_07 Incompatibility group   Col8282
Plasmid size   3715 bp Coordinate of oriT [Strand]   2837..2928 [-]
Host baterium   Shigella sonnei strain AUSMDU00010534

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -