Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105767
Name   oriT_DSM 16365|unnamed2 in_silico
Organism   Lactiplantibacillus argentoratensis strain DSM 16365
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP032753 (9796..9821 [-], 26 nt)
oriT length   26 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 26 nt

>oriT_DSM 16365|unnamed2
ATTTTGGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3904 GenBank   WP_121054820
Name   mobQ_LPA65_RS15750_DSM 16365|unnamed2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80466.40 Da        Isoelectric Point: 9.6617

>WP_121054820.1 MULTISPECIES: MobQ family relaxase [Lactiplantibacillus]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGQHYFYARSVMPDSFILTPKNSPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSADEQKELLIKYVQENFVDQGMVADVAIHRDHADNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAASVNQVLEQKNIP
DRISEKSFIDQGIDDTPTQHEGINSKRHERKAFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAIGEDVTKQLLMINQQESSLKKADELLNKLV
DRTIKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELSERLMNIRDDLLNRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEKVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFTTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQSEKIQKQLKEQQAKDDQYRKANMGHYQPLNYKPVSPKY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   6204 GenBank   NZ_CP032753
Plasmid name   DSM 16365|unnamed2 Incompatibility group   -
Plasmid size   53470 bp Coordinate of oriT [Strand]   9796..9821 [-]
Host baterium   Lactiplantibacillus argentoratensis strain DSM 16365

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -