Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105755 |
| Name | oriT_pPb204002  |
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain Pb204 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP030009 (808..867 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pPb204002
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3895 | GenBank | WP_024145502 |
| Name | Relaxase_DN066_RS24865_pPb204002 |
UniProt ID | _ |
| Length | 499 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 499 a.a. Molecular weight: 55128.25 Da Isoelectric Point: 7.1419
>WP_024145502.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
ETLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GSLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPDAVLSHEPAYERDAAHGQPDVADHRPGLRAADSLKCGHSMVAGAADTRQLHDHPGAEEHAGHAV
REEQRRAAHDLRRGTTPLREGEPGRGTVRRGFELDDTGGEIAHDGTGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERSAERARHGLEHAGAEFKRAAAPVVVRLNDIEAHREQERAAQHQKALELERSQR
QQEYDGPSL
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
ETLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GSLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPDAVLSHEPAYERDAAHGQPDVADHRPGLRAADSLKCGHSMVAGAADTRQLHDHPGAEEHAGHAV
REEQRRAAHDLRRGTTPLREGEPGRGTVRRGFELDDTGGEIAHDGTGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERSAERARHGLEHAGAEFKRAAAPVVVRLNDIEAHREQERAAQHQKALELERSQR
QQEYDGPSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1758 | GenBank | WP_001555769 |
| Name | WP_001555769_pPb204002 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11761.54 Da Isoelectric Point: 7.8686
>WP_001555769.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GSSGLDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GSSGLDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6192 | GenBank | NZ_CP030009 |
| Plasmid name | pPb204002 | Incompatibility group | Col440II |
| Plasmid size | 4096 bp | Coordinate of oriT [Strand] | 808..867 [+] |
| Host baterium | Enterobacter hormaechei subsp. xiangfangensis strain Pb204 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |