Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105742
Name   oriT1_pLH3.4 in_silico
Organism   Xanthomonas perforans strain LH3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP018473 ( 25444..25554 [-], 111 nt)
oriT length   111 nt
IRs (inverted repeats)      71..78, 81..88  (CACCATGC..GCATGGTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 111 nt

>oriT1_pLH3.4
CCGGCTGGCCCCGCAGGGCAGGATGCCCCGTTGAGCGCCGCAGGCGCGAATAAGGGGAAGTGAAGAGGATCACCATGCTTGCATGGTGGGCCTACTTCACACATCCTGCCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3890 GenBank   WP_155767284
Name   Relaxase_BJD13_RS01080_pLH3.4 insolico UniProt ID   _
Length   632 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 632 a.a.        Molecular weight: 69658.74 Da        Isoelectric Point: 11.1068

>WP_155767284.1 TraI/MobA(P) family conjugative relaxase [Xanthomonas perforans]
MIAKHVPMRSLGKSDFAGLVRYVTDAQSKDHRLGQVQVTNCAADTVRDAITEVLATQQANTRAKGDKTYH
LIVSFRAGEQPSADTLRQIEARICDGLGLGEHQRVSAVHNDTDNLHIHIAINKIHPTRGTMQEPYYSHRA
LADLCTTLERDYGLERDNHEPRQRGAAARAGDLEQHAGVESLVGWIKRECLDEIKDAASWAELHQVMRDN
GLALRARGNGLVIEAGDGTIIKASTLARDLSKPALEKRLGTFEASPERQAAPARRNYQKGRPMRLRGGLD
TTELYARYKGAQQTLTAARAGVLAEAKRRKDRAIEHAKKAAATRRAAIKHLTDGRLTKKLLYAQASAALR
ADLEAIHKRHDQERAAIYNEHRRRPWADWLKQQATAGDGQALDALRAREAAQGLKGDTIQGDGQAKPGHA
PVIDSITKKGTIIYRAGSSAVRDDGERLAVSSQADRAGVAAALRLAMERYGERITVSGSVEFKAAVIRAA
VDAQLPITFADPALESRRQAEATKAQAKRRPGVPLSARSRRHIAGTACARWASSTGCTSRAKPSGRYKRR
PRPPRHRRRPKFSSRPGPRRPSWNSARRGYGRRWKPRRRNARRARSAGDDACEFSDVRLASELAARSYIA
AS

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(12-250)

Large polyvalent protein-associated domain 7 (LPD7)

(423-511)


  Protein structure



No available structure.




Auxiliary protein

ID   1754 GenBank   WP_074053059
Name   WP_074053059_pLH3.4 insolico UniProt ID   _
Length   125 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  Auxiliary protein sequence


Download         Length: 125 a.a.        Molecular weight: 13510.28 Da        Isoelectric Point: 7.9653

>WP_074053059.1 MULTISPECIES: conjugal transfer transcriptional regulator TraJ [Pseudomonadota]
MEANENKVTRKGSTPIKVYCLSDERAAIEANAQAAGMSTSAYLLAVGQGYQVKGVTDFENVRDLVRVNGD
LGRLGGLLKLWLTDDPRTARFGDDTIRALLARIEATQDKISTIAESVVRPRGGQS

  Protein domains



No domain identified.



  Protein structure



No available structure.



ID   1754 GenBank   WP_074053059
Name   WP_074053059_pLH3.4 insolico UniProt ID   _
Length   125 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  Auxiliary protein sequence


Download         Length: 125 a.a.        Molecular weight: 13510.28 Da        Isoelectric Point: 7.9653

>WP_074053059.1 MULTISPECIES: conjugal transfer transcriptional regulator TraJ [Pseudomonadota]
MEANENKVTRKGSTPIKVYCLSDERAAIEANAQAAGMSTSAYLLAVGQGYQVKGVTDFENVRDLVRVNGD
LGRLGGLLKLWLTDDPRTARFGDDTIRALLARIEATQDKISTIAESVVRPRGGQS

  Protein domains



No domain identified.



  Protein structure



No available structure.




Host bacterium

ID   6179 GenBank   NZ_CP018473
Plasmid name   pLH3.4 Incompatibility group   -
Plasmid size   38746 bp Coordinate of oriT [Strand]   6070..6180 [-]; 25444..25554 [-]
Host baterium   Xanthomonas perforans strain LH3

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -