Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105717 |
| Name | oriT_pDSM109990_e  |
| Organism | Sulfitobacter dubius strain DSM 109990 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP085149 (44580..44599 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pDSM109990_e
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3870 | GenBank | WP_243263993 |
| Name | mobQ_DSM109990_RS20280_pDSM109990_e |
UniProt ID | _ |
| Length | 429 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 429 a.a. Molecular weight: 48549.65 Da Isoelectric Point: 6.9481
>WP_243263993.1 MobQ family relaxase [Sulfitobacter dubius]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEKQRDAAQERGD
KLSAEELDRDPELKLGPAANSMERRAKAMAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGAERDAGQGRVSAGLAALRAATAKDRSSERNPEDFRERLSQVVGRSRDQDDAPKPEGRNYARKRLKEIM
EKDAGRDGQSAVHKLDGHSEYDLGEDTSREARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRE
IDRDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEKQRDAAQERGD
KLSAEELDRDPELKLGPAANSMERRAKAMAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGAERDAGQGRVSAGLAALRAATAKDRSSERNPEDFRERLSQVVGRSRDQDDAPKPEGRNYARKRLKEIM
EKDAGRDGQSAVHKLDGHSEYDLGEDTSREARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRE
IDRDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3882 | GenBank | WP_243263995 |
| Name | t4cp2_DSM109990_RS20290_pDSM109990_e |
UniProt ID | _ |
| Length | 551 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 551 a.a. Molecular weight: 60605.70 Da Isoelectric Point: 7.8952
>WP_243263995.1 type IV secretory system conjugative DNA transfer family protein [Sulfitobacter dubius]
MRGVIRLFDRLFRFFGRLIFTPILLGWMIGAVLFGAMIGFIIGGVVAMTVFGPPLGHSAWEWVIIAPPVF
IGAVFGFQYWRKTSGADAFFGLTGDSHGSARFANRKELKKLQGKDGLLIGRNPHTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTTHVLDPFEVSGMPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVSEAHWNEEAKAILGGLIMFCVCHEDRDRRCLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVTSRSDFRFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEVSGSGQSGPVERLKAPALFLLDEFAALGRLEAVERAM
GLMAGYGLQLWPILQDMSQLKDLYGARAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGFQTDSYKP
GDNPSFSNNVTGRDLLTPDEIMQMPPELQLLRVQGQPSALAQKLRYYADPEFKGLFVPQDQ
MRGVIRLFDRLFRFFGRLIFTPILLGWMIGAVLFGAMIGFIIGGVVAMTVFGPPLGHSAWEWVIIAPPVF
IGAVFGFQYWRKTSGADAFFGLTGDSHGSARFANRKELKKLQGKDGLLIGRNPHTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTTHVLDPFEVSGMPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVSEAHWNEEAKAILGGLIMFCVCHEDRDRRCLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVTSRSDFRFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEVSGSGQSGPVERLKAPALFLLDEFAALGRLEAVERAM
GLMAGYGLQLWPILQDMSQLKDLYGARAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGFQTDSYKP
GDNPSFSNNVTGRDLLTPDEIMQMPPELQLLRVQGQPSALAQKLRYYADPEFKGLFVPQDQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6154 | GenBank | NZ_CP085149 |
| Plasmid name | pDSM109990_e | Incompatibility group | - |
| Plasmid size | 47721 bp | Coordinate of oriT [Strand] | 44580..44599 [+] |
| Host baterium | Sulfitobacter dubius strain DSM 109990 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |