Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105671
Name   oriT_LG728|unnamed1 in_silico
Organism   Lactococcus garvieae strain LG728
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP071287 (9200..9237 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACCAC..GTGGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_LG728|unnamed1
ACACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3839 GenBank   WP_207144610
Name   mobQ_J0J32_RS10115_LG728|unnamed1 insolico UniProt ID   _
Length   680 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 680 a.a.        Molecular weight: 79279.52 Da        Isoelectric Point: 6.6679

>WP_207144610.1 MobQ family relaxase [Lactococcus garvieae]
MAIFHMNFSNISAGKGRSAVASASYRSGEKLYSEMENKTYFYDRSVMPESFILLPENAPEWAKDRQKLWN
EVEAIDRKVNSRYAKEFNVALPIELSEDEQKELLTEYVQKIFVDKGMVADVAIHRDHDENPHAHVMLTNR
PFNADGSWGQKAKKEYILDENGNKTYTANGHARSRKIWLVDWDKVGKVEEWRKAWAEHVNSVFQEKKIDE
RISEKTLEAQGINDIATQHVGVTGNRDERAEFNELVLENRQHKAELESLDEKINNELKVKQLKNFYSFNE
KKVIAELSKELHTFIDLEHLEEKNKMLFNWKNSVLIKQIVGKDVSEELNKVSQQEFSLDNANRLIDKVVD
RSIKAMYPTVDSNAFSMPEKRQLIRETESENKVFTGAELDDRLSMIRADSLNRQIVALTKRPFTSLTMLS
KQEKYHIDNINNVLAYQGYNYEHIAMSHGKILRNYESEEFSKELDIIQRSLKQINSIEEVRKIVEQQYSV
VLGTIFPDSELNKLSLVEKEKTYNAVIYFNPKIKKLTQSELENIVKEPPILFSTKEHNQGLSYLAGRIRL
EDINNKHLTRVLKFEGTKKLFIGEAKADKNIDPELLKEATNRNDKQSYKNEFYRDKNMENYQSVTYADTS
PAEYMNRLFSGVLISVLYNNENQRKKGLEEVEWDMERKHREQNKSGGLSR

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-383)

MobA/MobL family (MobA_MobL)

(17-237)


  Protein structure



No available structure.




Host bacterium

ID   6108 GenBank   NZ_CP071287
Plasmid name   LG728|unnamed1 Incompatibility group   -
Plasmid size   39782 bp Coordinate of oriT [Strand]   9200..9237 [+]
Host baterium   Lactococcus garvieae strain LG728

Cargo genes

Drug resistance gene   mdt(A), cat, dfrG, erm(B)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -