Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105634 |
| Name | oriT_Kutzing En|p1  |
| Organism | Nostoc sphaeroides strain Kutzing En |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP031942 (14151..14178 [+], 28 nt) |
| oriT length | 28 nt |
| IRs (inverted repeats) | 16..21, 23..28 (ATCAGA..TCTGAT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 28 nt
>oriT_Kutzing En|p1
AGTTTGGCGCTTGGGATCAGAATCTGAT
AGTTTGGCGCTTGGGATCAGAATCTGAT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3824 | GenBank | WP_118171694 |
| Name | Relaxase_D1367_RS29245_Kutzing En|p1 |
UniProt ID | _ |
| Length | 551 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 551 a.a. Molecular weight: 63179.82 Da Isoelectric Point: 9.1193
>WP_118171694.1 relaxase/mobilization nuclease domain-containing protein [Nostoc sphaeroides]
MITKIKANKSFRGTTKYVLEKEKAKIIGGNMYGKTTEKLVEQFTLSAHLNPQLKDPFYHLMLSVPKTDRD
LNDDELANLSLRHFANFIVLSRLKGDEAQVKQPDKRIADTKLNQLVDEFIETELPAYDFFIARHSDKKHD
HTHIVGSRVNNLDSKSIRTWNNYAHSEHSARLLEREFQLTPVQSSWESKRKAMTRNQLERVESMGLPGEE
IMRRAIEKVAVNKPTMPEFIERLWSEHQVKAIVSYYSHGGVRGIKFGIDIGSVNEDGSPRLLWKQGGNLN
KYKCSFSKLQTELGVNYQPLRDNAEIKRLTNLIELAPITPINQQIIEQATSNISTDNLETLPKQSEVIPE
IKTPITQAQSLELYRHYSLELEKELVTDRDKQVAVRAIQDGRNDLEVAEILKASPANWNQEEARALVLIA
KNQLAKQQPSPEAQRAEQQHLRQKLLAIAVPVGVELINHFIQYPGKDSLKFKHSSLSKQGKELVLTHDER
GEVFRVQVNRNPQGEIEYSVVNIGEVKQSDIETWQKAEQILLEYLEHKQQQSVTRNRGLSR
MITKIKANKSFRGTTKYVLEKEKAKIIGGNMYGKTTEKLVEQFTLSAHLNPQLKDPFYHLMLSVPKTDRD
LNDDELANLSLRHFANFIVLSRLKGDEAQVKQPDKRIADTKLNQLVDEFIETELPAYDFFIARHSDKKHD
HTHIVGSRVNNLDSKSIRTWNNYAHSEHSARLLEREFQLTPVQSSWESKRKAMTRNQLERVESMGLPGEE
IMRRAIEKVAVNKPTMPEFIERLWSEHQVKAIVSYYSHGGVRGIKFGIDIGSVNEDGSPRLLWKQGGNLN
KYKCSFSKLQTELGVNYQPLRDNAEIKRLTNLIELAPITPINQQIIEQATSNISTDNLETLPKQSEVIPE
IKTPITQAQSLELYRHYSLELEKELVTDRDKQVAVRAIQDGRNDLEVAEILKASPANWNQEEARALVLIA
KNQLAKQQPSPEAQRAEQQHLRQKLLAIAVPVGVELINHFIQYPGKDSLKFKHSSLSKQGKELVLTHDER
GEVFRVQVNRNPQGEIEYSVVNIGEVKQSDIETWQKAEQILLEYLEHKQQQSVTRNRGLSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6071 | GenBank | NZ_CP031942 |
| Plasmid name | Kutzing En|p1 | Incompatibility group | - |
| Plasmid size | 42943 bp | Coordinate of oriT [Strand] | 14151..14178 [+] |
| Host baterium | Nostoc sphaeroides strain Kutzing En |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |