Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105504
Name   oriT_pL21581-3 in_silico
Organism   Carnobacterium maltaromaticum strain TMW 2.1581
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP016847 (39439..39575 [-], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      81..86, 88..93  (TTTGTA..TACAAA)
 21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pL21581-3
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCAACTTTGTAATACAAGAACGAAGTCATTTGTATTACAAAGTGATAGCTTGCAGTATTTATGGCTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3747 GenBank   WP_035063709
Name   Replic_Relax_BFC23_RS16930_pL21581-3 insolico UniProt ID   _
Length   267 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 267 a.a.        Molecular weight: 32077.08 Da        Isoelectric Point: 8.2273

>WP_035063709.1 MULTISPECIES: replication-relaxation family protein [Carnobacterium]
MEALLANYYVEFKPRVNTDWIILCILHELRIVSFKQIYELINLTFPIAEKNLRRQINQLKDKELIDFITD
DKLGNAHYYFMTRDGHNSIGGYYPYPKVPQYNLFHHLMVTNALINVLTLFNEHPHLLYVQSERRQVFEVK
DCDPSKKGKIYNVSDFLFCFEAKSELKINWYFEIELTMKTKNRYTNNIFPKYLALLQRDKNARLIYVTPS
KSIFRELELFKGFYLHKKKKEVGEKADELFERLHIFSSESFEDNLKKIIAEDEFINW

  Protein domains



No domain identified.



  Protein structure



No available structure.




T4CP

ID   3739 GenBank   WP_051926640
Name   t4cp2_BFC23_RS16925_pL21581-3 insolico UniProt ID   _
Length   714 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 714 a.a.        Molecular weight: 81356.94 Da        Isoelectric Point: 5.2483

>WP_051926640.1 TraM recognition domain-containing protein [Carnobacterium maltaromaticum]
MNDDDNLYNGLFGNKKNQKNGNENDKTSRYNVISIVVSISFVLLYPFAIFGIFPVLYFIYLDKQQRLENV
HDIEFKSFLQKGNSTFGLISGGLILVNILSSIYLIPRGYLSAYLLFPLNMIHHALVFSWQTVVALLLGGA
GMASIMLTIFSFIEGRKVVSKKSQIAKVKESKAYKKRLSNKFEESKNFVEEYEEAYATAKLEGNVTKLDE
LAHNILLGTDEYGKPYFITLKELNQHALLPATTGGGKTVVLQIIVEHCAKFNSPCLIIDGKGAKDTRLAV
SDIAGKYNREVKEFTDSGDISYNPLKYGNSIEVRDKLVSLAETESIFYSGANKQLLMGTTQLLDVFNIER
DLENMSDYFSPRKVLLLFINELLLIYPDLLVFEVEESPKNKSKKSVKKEVEVVEKAEVKDSASSKYDQIE
DDGVATEVVETITANPETMKLEDMYWVISNKKKRLKKSSLRMFEQLFARYEHKDNPFYLYATAESLQTNF
YMLLDSELSHLFDTKTNKNELDLMEATRKNEIIYVALDGLIYTEYIHTLAQFMIADINHLASERYEITED
FPFVVLFDEPSAYLSDKFIDTVNKTRGAGVHALFAPQTLADIEAIDPILLKQLIGNTNTYIVGQTNEKSE
IDYWSELFGSYDDIEITSVTQQEAGFSDVNKTDWTGEKGTKRDVENFIVHPNNIKELRTGEFYILRKGNN
THEPIRKVYMRKPI

  Protein domains


Predicted by InterproScan.

TraM recognition site of TraD and TraG (TraG-D_C)

(563-687)

  Protein structure



No available structure.




Host bacterium

ID   5942 GenBank   NZ_CP016847
Plasmid name   pL21581-3 Incompatibility group   -
Plasmid size   69778 bp Coordinate of oriT [Strand]   39439..39575 [-]
Host baterium   Carnobacterium maltaromaticum strain TMW 2.1581

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -