Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 105502
• Name: oriT_p.BC006.5
• Organism: Bacillus paranthracis strain Bc006
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP119634 (4338..4375 [+], 38 nt)
• oriT length: 38 nt
• IRs (inverted repeats): 1..6, 10..15 (CTTTAC..GTAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 38 nt

>oriT_p.BC006.5
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_P3K65_RS28250_p.BC006.5

• ID: 3745
• GenBank: WP_276105354
• Name: mobV_P3K65_RS28250_p.BC006.5
• UniProt ID: _
• Length: 408 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 408 a.a.
• Molecular weight: 47679.91 Da
• Isoelectric Point: 9.4516

>WP_276105354.1 MobV family relaxase [Bacillus paranthracis]
MSMIVARMQKMKAENLIGIGNHNQRKTKNHSNPDIDTSLSELNYDLVNRTENYKTDIENFINENKSITRA
VRKDAVLINEWIITSDRKFFEDLSDEDTKEFFISAKEYFAENFGEENIRYATVHLDETTPHMHLGIVPFD
KDKKLSAKRVFNREALRNVQEDLPKHLQEKGFDIKRGLEGSDRKNLTVPEFKELKEKEKEIEREIDRKKN
ELKAYTQENKIPNKIDVTITRETKDVKVPSGEKFLGHEFTKTVKKKTGNLIISEEDFSKLEQALKTGREK
EEQLNKILDSDIHKENKELKTTVKDLKTKTNEVINDYNSLVKDYNSLVDENKGLRATVGNLKEEIKLIYQ
STKRFLKDRTSDLKAFKEVFKELADSISNSSREKGLDSNFKKEFDKENKKNRTRGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 5940
• GenBank: NZ_CP119634
• Plasmid name: p.BC006.5
• Incompatibility group: -
• Plasmid size: 4415 bp
• Coordinate of oriT [Strand]: 4338..4375 [+]
• Host baterium: Bacillus paranthracis strain Bc006

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -