Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105491
Name   oriT_pKAM622_6 in_silico
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM622
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP026398 (11104..11241 [-], 138 nt)
oriT length   138 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 138 nt

>oriT_pKAM622_6
CGAATGGGCAGGCGTCCGTTGGAACCACGTGGCGAAGCCATGTGTGTTACAACGGTCATCCTGTATTGCTCATCCGCTCTACTATCGTATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCACAAATGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3741 GenBank   WP_276086056
Name   Relaxase_P4I30_RS30415_pKAM622_6 insolico UniProt ID   _
Length   444 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 444 a.a.        Molecular weight: 50721.14 Da        Isoelectric Point: 10.0175

>WP_276086056.1 TraI/MobA(P) family conjugative relaxase [Klebsiella quasipneumoniae]
MIVKKVKNPQKAASKAVRVSRLTDYIREPERENSQEKCIHAGARGFITDEPQSQTAEMIALSQEAVRSKD
TINHYVLSWREGEQPSPEQVEEAVSIFMDELGVKDHQAIYGLHADTDNLHLHLAINRVHPETLKVVKINN
GFDIEAAHKAIARIENAQGWQREQNGRYQVLENGELGREHIDKDKPRQPAQPKRDMENRTGEKSAERIAI
EDGAPIIKKAQTWEQLHRELAAKGMRYEKTGSGATLFVGDVGVKASSADRDASLSKLQKRLGAYQPPPQR
QQVAQREPEPIKPDVPGWKDYITGRKAHYAEKNAAKLALDKRQEQERKQIAEQQKARRDELMRGNWKGKG
EVLNAMRSVIAAEQAAEKAALKEKHQKQREQHRQQFRPYPDLEQWQRMQKSPELAEQWRHRASEPHASRA
RAAKPPTPRDIRAYQPEIVGQQVH

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(19-273)


  Protein structure



No available structure.




Host bacterium

ID   5929 GenBank   NZ_AP026398
Plasmid name   pKAM622_6 Incompatibility group   IncP6
Plasmid size   31078 bp Coordinate of oriT [Strand]   11104..11241 [-]
Host baterium   Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM622

Cargo genes

Drug resistance gene   blaGES-4, catB8, ant(3'')-Ia, qacE, sul1
Virulence gene   -
Metal resistance gene   merR, merT, merP, merC, merA, merD, merE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -