Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105455
Name   oriT_pALWEK1.13 in_silico
Organism   Acinetobacter lwoffii strain EK30A
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP080637 (3064..3092 [+], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      1..8, 12..19  (AGTTTCTC..GAGAAACT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pALWEK1.13
AGTTTCTCGAAGAGAAACTGTTAAGTGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3717 GenBank   WP_104221583
Name   MobA_MobL_ABEKA_RS16890_pALWEK1.13 insolico UniProt ID   _
Length   350 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 350 a.a.        Molecular weight: 40764.67 Da        Isoelectric Point: 6.7843

>WP_104221583.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MASYHLQLRDKPKGYALEHYFYIARLEKYQHVRVKSQEVLEHIEPGGCMPSWAKDPADFWKAADTHERAN
AKVYMEYELALPNELTPEQRKTLVEAFLNEHVASHQYPHSYAIHNVKSRIGGIDQPHCHLMLSLKANDGL
DRTPETYFKRFNPKNPEKGGAKKRQLDEGFDNYRSFLLYIRKEWENYMNDALRQYAPTLTYQIDGQEINI
PNRVSSSSYKQYNLDHGTFYIAEPKLGVGNQNNTPEYLEQIKQIREHNQQEFEREQLQKHQELNLSAKPF
YSVNDQPYSSLEVTALLKSLNPDTHSVEITAIQQQQALVDPSFKNQELNLTPENKPTPTIKKDTGFNFSM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(44-196)


  Protein structure



No available structure.




Host bacterium

ID   5893 GenBank   NZ_CP080637
Plasmid name   pALWEK1.13 Incompatibility group   -
Plasmid size   8910 bp Coordinate of oriT [Strand]   3064..3092 [+]
Host baterium   Acinetobacter lwoffii strain EK30A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIF11