Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105454 |
| Name | oriT_pPB07_3  |
| Organism | Pseudochrobactrum algeriensis isolate C130915_07 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP075359 (10407..10435 [-], 29 nt) |
| oriT length | 29 nt |
| IRs (inverted repeats) | 1..7, 12..18 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 29 nt
>oriT_pPB07_3
ACATTGCACAAGCAATGTATAAGCGCGCA
ACATTGCACAAGCAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3716 | GenBank | WP_213595945 |
| Name | mobQ_KHQ09_RS00165_pPB07_3 |
UniProt ID | _ |
| Length | 409 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 409 a.a. Molecular weight: 46886.30 Da Isoelectric Point: 9.5096
>WP_213595945.1 MobQ family relaxase [Pseudochrobactrum algeriensis]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLYDDRQGLEHDYSRKSGVIHSEIMVPENAPDWMRDRSQLW
NAVEIIEKRRDAQLAREIEVSLPRELDRGQRLELLRGFIEREFVDRGMIADVAVHESKARDGFSQPHAHV
MLTMRELTGDGFGKKDRGWNAPDLLLGWREAWARDANIALEHAGRSERIDHRSIDAQRSEAEQQVERARA
SGQEKLVFEYEKKVIELSREPEPKIGPSANAQEKRGIVTERGSAFRAAQARNAQREELGRKQLELRLELM
ERGRAFIASARERLDQLWNRAEAALYRIKERVIGGGGRLHADPEHSDFDTRREVVSGRDFKRSEEQTFNA
VRERTAPENANQARRDAVLGRERETISIEQESIDRSQEQRESILGRGKSSDRRDPERSR
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLYDDRQGLEHDYSRKSGVIHSEIMVPENAPDWMRDRSQLW
NAVEIIEKRRDAQLAREIEVSLPRELDRGQRLELLRGFIEREFVDRGMIADVAVHESKARDGFSQPHAHV
MLTMRELTGDGFGKKDRGWNAPDLLLGWREAWARDANIALEHAGRSERIDHRSIDAQRSEAEQQVERARA
SGQEKLVFEYEKKVIELSREPEPKIGPSANAQEKRGIVTERGSAFRAAQARNAQREELGRKQLELRLELM
ERGRAFIASARERLDQLWNRAEAALYRIKERVIGGGGRLHADPEHSDFDTRREVVSGRDFKRSEEQTFNA
VRERTAPENANQARRDAVLGRERETISIEQESIDRSQEQRESILGRGKSSDRRDPERSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3706 | GenBank | WP_213595942 |
| Name | t4cp2_KHQ09_RS00155_pPB07_3 |
UniProt ID | _ |
| Length | 615 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 615 a.a. Molecular weight: 68105.00 Da Isoelectric Point: 9.8675
>WP_213595942.1 type IV secretory system conjugative DNA transfer family protein [Pseudochrobactrum algeriensis]
MNFMLETRHWVTMIIAVILAVSAVIFLPLVVAIYPVATYAFLIVALAVIFDILANATEGRRAPLKVAAWI
CLLLAALVALMPLKGDFSDMQMTIQAWTNAGWSLPRGIWEGVKRLNRYSALHQQALLISLALGVAVGALA
IIIPLGSILNPRIGRNRKSNTGPWQAGWMSPRDIASLASNKTGLPLALHNGKLLRYQKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAIIDHQGPVVVLDIKGENFAVTRRYRQSLGRKVAVLNPFGIIEDSNDQFNPLDY
IRLNELGRDVALVADGLVRPEPGDGAHFSEMARQLVTAAIEVVVTQEEPNRRNLIAVADLLLSGNLDTTL
EAWVKNKDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLARSSFDMDDLLDDEVDLF
IVVPLDQVDKQAVFMRLFINLVLGTVVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWVARHFGDNTVYSQQIREAKTINEKRDVSY
SEQRQKIMTAEQIMGMKTDELLLLVGNRNPLKAKQNIYFKRKNYHGKFDGNPLVL
MNFMLETRHWVTMIIAVILAVSAVIFLPLVVAIYPVATYAFLIVALAVIFDILANATEGRRAPLKVAAWI
CLLLAALVALMPLKGDFSDMQMTIQAWTNAGWSLPRGIWEGVKRLNRYSALHQQALLISLALGVAVGALA
IIIPLGSILNPRIGRNRKSNTGPWQAGWMSPRDIASLASNKTGLPLALHNGKLLRYQKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAIIDHQGPVVVLDIKGENFAVTRRYRQSLGRKVAVLNPFGIIEDSNDQFNPLDY
IRLNELGRDVALVADGLVRPEPGDGAHFSEMARQLVTAAIEVVVTQEEPNRRNLIAVADLLLSGNLDTTL
EAWVKNKDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLARSSFDMDDLLDDEVDLF
IVVPLDQVDKQAVFMRLFINLVLGTVVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWVARHFGDNTVYSQQIREAKTINEKRDVSY
SEQRQKIMTAEQIMGMKTDELLLLVGNRNPLKAKQNIYFKRKNYHGKFDGNPLVL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5892 | GenBank | NZ_CP075359 |
| Plasmid name | pPB07_3 | Incompatibility group | - |
| Plasmid size | 33605 bp | Coordinate of oriT [Strand] | 10407..10435 [-] |
| Host baterium | Pseudochrobactrum algeriensis isolate C130915_07 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |