Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 105453
• Name: oriT_pPB16_3
• Organism: Pseudochrobactrum algeriensis strain C150915_16
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP075353 (10407..10435 [-], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 1..7, 12..18 (ACATTGC..GCAATGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_pPB16_3
ACATTGCACAAGCAATGTATAAGCGCGCA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_KHQ07_RS00060_pPB16_3

• ID: 3715
• GenBank: WP_213595945
• Name: mobQ_KHQ07_RS00060_pPB16_3
• UniProt ID: _
• Length: 409 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 409 a.a.
• Molecular weight: 46886.30 Da
• Isoelectric Point: 9.5096

>WP_213595945.1 MobQ family relaxase [Pseudochrobactrum algeriensis]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLYDDRQGLEHDYSRKSGVIHSEIMVPENAPDWMRDRSQLW
NAVEIIEKRRDAQLAREIEVSLPRELDRGQRLELLRGFIEREFVDRGMIADVAVHESKARDGFSQPHAHV
MLTMRELTGDGFGKKDRGWNAPDLLLGWREAWARDANIALEHAGRSERIDHRSIDAQRSEAEQQVERARA
SGQEKLVFEYEKKVIELSREPEPKIGPSANAQEKRGIVTERGSAFRAAQARNAQREELGRKQLELRLELM
ERGRAFIASARERLDQLWNRAEAALYRIKERVIGGGGRLHADPEHSDFDTRREVVSGRDFKRSEEQTFNA
VRERTAPENANQARRDAVLGRERETISIEQESIDRSQEQRESILGRGKSSDRRDPERSR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-204)

Protein structure

No available structure.

T4CP

t4cp2_KHQ07_RS00050_pPB16_3

• ID: 3705
• GenBank: WP_213595942
• Name: t4cp2_KHQ07_RS00050_pPB16_3
• UniProt ID: _
• Length: 615 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 615 a.a.
• Molecular weight: 68105.00 Da
• Isoelectric Point: 9.8675

>WP_213595942.1 type IV secretory system conjugative DNA transfer family protein [Pseudochrobactrum algeriensis]
MNFMLETRHWVTMIIAVILAVSAVIFLPLVVAIYPVATYAFLIVALAVIFDILANATEGRRAPLKVAAWI
CLLLAALVALMPLKGDFSDMQMTIQAWTNAGWSLPRGIWEGVKRLNRYSALHQQALLISLALGVAVGALA
IIIPLGSILNPRIGRNRKSNTGPWQAGWMSPRDIASLASNKTGLPLALHNGKLLRYQKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAIIDHQGPVVVLDIKGENFAVTRRYRQSLGRKVAVLNPFGIIEDSNDQFNPLDY
IRLNELGRDVALVADGLVRPEPGDGAHFSEMARQLVTAAIEVVVTQEEPNRRNLIAVADLLLSGNLDTTL
EAWVKNKDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLARSSFDMDDLLDDEVDLF
IVVPLDQVDKQAVFMRLFINLVLGTVVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWVARHFGDNTVYSQQIREAKTINEKRDVSY
SEQRQKIMTAEQIMGMKTDELLLLVGNRNPLKAKQNIYFKRKNYHGKFDGNPLVL

Protein domains

Predicted by InterproScan.

• Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf) (187-604)

Protein structure

No available structure.

Host bacterium

• ID: 5891
• GenBank: NZ_CP075353
• Plasmid name: pPB16_3
• Incompatibility group: -
• Plasmid size: 33637 bp
• Coordinate of oriT [Strand]: 10407..10435 [-]
• Host baterium: Pseudochrobactrum algeriensis strain C150915_16

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -