Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105452
Name   oriT_pPB17_3 in_silico
Organism   Pseudochrobactrum algeriensis strain C150915_17
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP075350 (2311..2339 [+], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      1..7, 12..18  (ACATTGC..GCAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pPB17_3
ACATTGCACAAGCAATGTATAAGCGCGCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3714 GenBank   WP_213595945
Name   mobQ_KHQ08_RS17820_pPB17_3 insolico UniProt ID   _
Length   409 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 409 a.a.        Molecular weight: 46886.30 Da        Isoelectric Point: 9.5096

>WP_213595945.1 MobQ family relaxase [Pseudochrobactrum algeriensis]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLYDDRQGLEHDYSRKSGVIHSEIMVPENAPDWMRDRSQLW
NAVEIIEKRRDAQLAREIEVSLPRELDRGQRLELLRGFIEREFVDRGMIADVAVHESKARDGFSQPHAHV
MLTMRELTGDGFGKKDRGWNAPDLLLGWREAWARDANIALEHAGRSERIDHRSIDAQRSEAEQQVERARA
SGQEKLVFEYEKKVIELSREPEPKIGPSANAQEKRGIVTERGSAFRAAQARNAQREELGRKQLELRLELM
ERGRAFIASARERLDQLWNRAEAALYRIKERVIGGGGRLHADPEHSDFDTRREVVSGRDFKRSEEQTFNA
VRERTAPENANQARRDAVLGRERETISIEQESIDRSQEQRESILGRGKSSDRRDPERSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-204)


  Protein structure



No available structure.




T4CP

ID   3704 GenBank   WP_213595942
Name   t4cp2_KHQ08_RS17830_pPB17_3 insolico UniProt ID   _
Length   615 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 615 a.a.        Molecular weight: 68105.00 Da        Isoelectric Point: 9.8675

>WP_213595942.1 type IV secretory system conjugative DNA transfer family protein [Pseudochrobactrum algeriensis]
MNFMLETRHWVTMIIAVILAVSAVIFLPLVVAIYPVATYAFLIVALAVIFDILANATEGRRAPLKVAAWI
CLLLAALVALMPLKGDFSDMQMTIQAWTNAGWSLPRGIWEGVKRLNRYSALHQQALLISLALGVAVGALA
IIIPLGSILNPRIGRNRKSNTGPWQAGWMSPRDIASLASNKTGLPLALHNGKLLRYQKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAIIDHQGPVVVLDIKGENFAVTRRYRQSLGRKVAVLNPFGIIEDSNDQFNPLDY
IRLNELGRDVALVADGLVRPEPGDGAHFSEMARQLVTAAIEVVVTQEEPNRRNLIAVADLLLSGNLDTTL
EAWVKNKDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLARSSFDMDDLLDDEVDLF
IVVPLDQVDKQAVFMRLFINLVLGTVVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWVARHFGDNTVYSQQIREAKTINEKRDVSY
SEQRQKIMTAEQIMGMKTDELLLLVGNRNPLKAKQNIYFKRKNYHGKFDGNPLVL

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(187-604)

  Protein structure



No available structure.




Host bacterium

ID   5890 GenBank   NZ_CP075350
Plasmid name   pPB17_3 Incompatibility group   -
Plasmid size   33605 bp Coordinate of oriT [Strand]   2311..2339 [+]
Host baterium   Pseudochrobactrum algeriensis strain C150915_17

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -