Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105435
Name   oriT_AWRIB429|unnamed in_silico
Organism   Oenococcus oeni strain AWRIB429
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP084702 (2805..2842 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_AWRIB429|unnamed
ACACAACCAATTTTAGTTGTTGTGTATAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3705 GenBank   WP_002819868
Name   mobQ_J3U91_RS09710_AWRIB429|unnamed insolico UniProt ID   D3LCH0
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80708.13 Da        Isoelectric Point: 8.9618

>WP_002819868.1 MobQ family relaxase [Oenococcus oeni]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWANDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQEDFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKAKASYKNNQEKVINRGHLDSLSEHLSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPPEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQMQLKEQQAKDDQYRKANMGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure


Source ID Structure
AlphaFold DB D3LCH0


Host bacterium

ID   5873 GenBank   NZ_CP084702
Plasmid name   AWRIB429|unnamed Incompatibility group   -
Plasmid size   21906 bp Coordinate of oriT [Strand]   2805..2842 [-]
Host baterium   Oenococcus oeni strain AWRIB429

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21