Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105334 |
| Name | oriT_CriePir75|unnamed3  |
| Organism | Klebsiella pneumoniae strain CriePir75 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP063022 (1049..1108 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_CriePir75|unnamed3
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3640 | GenBank | WP_193699470 |
| Name | Relaxase_GJJ10_RS27620_CriePir75|unnamed3 |
UniProt ID | _ |
| Length | 211 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 211 a.a. Molecular weight: 23368.54 Da Isoelectric Point: 7.3183
>WP_193699470.1 relaxase/mobilization nuclease domain-containing protein, partial [Klebsiella pneumoniae]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKN
S
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKN
S
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1638 | GenBank | WP_071599364 |
| Name | WP_071599364_CriePir75|unnamed3 |
UniProt ID | A0A9Q5XKH5 |
| Length | 113 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 113 a.a. Molecular weight: 12571.54 Da Isoelectric Point: 8.8015
>WP_071599364.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacterales]
MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTRAGRLPSISPALLRQLAGMGNNLNQI
ARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGPDDDC
MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTRAGRLPSISPALLRQLAGMGNNLNQI
ARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGPDDDC
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5772 | GenBank | NZ_CP063022 |
| Plasmid name | CriePir75|unnamed3 | Incompatibility group | Col440II |
| Plasmid size | 3511 bp | Coordinate of oriT [Strand] | 1049..1108 [+] |
| Host baterium | Klebsiella pneumoniae strain CriePir75 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |