Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105252
Name   oriT_pRHBSTW-00658_2 in_silico
Organism   Citrobacter freundii strain RHBSTW-00658
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP056366 (77447..77541 [+], 95 nt)
oriT length   95 nt
IRs (inverted repeats)      73..78, 85..90  (AAAAAA..TTTTTT)
 73..78, 84..89  (AAAAAA..TTTTTT)
 27..34, 37..44  (AGCGTGAT..ATCACGCT)
 22..27, 36..41  (GTGATA..TATCAC)
 13..19, 31..37  (TAAATCA..TGATTTA)
Location of nic site      55..56
Conserved sequence flanking the
  nic site    		  GGTGTATAGC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 95 nt

>oriT_pRHBSTW-00658_2
TTTTTTTTCTTTTAAATCATTGTGATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   3566 GenBank   WP_142879667
Name   traD_HV257_RS24295_pRHBSTW-00658_2 insolico UniProt ID   _
Length   694 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 694 a.a.        Molecular weight: 77914.54 Da        Isoelectric Point: 8.5005

>WP_142879667.1 conjugative transfer system coupling protein TraD [Citrobacter freundii]
MAKSKRTNLHAQENFYRPILEYRSASVLLICAIIMLFMGFRSDGLNIAPIILYTAAFMLLVCLYRCKTAY
PYLMAHWRVFQRQIMFISLKSLRSINKSNFFSNERKYRQLVQEYKKSNRQVPDRKTYFCNGFEWGPEHAD
RAYQIANLSSDKREIALPFALNPIARHFEAMARSMGGSNAIFAVDKRAPIFVTEDNWFGHTLITGNVGTG
KTVLQRLLSISMLHLGHVIVVIDPKNDADWRQSLMDEAAELGLPFYKFHPAQPSSSVCIDVCNAYTNVSD
LTSRLLSLVSVPGEVNPFVQYAEALVSTVITGLSYTDKKPSIYLIHKNMKSHMAILNLTVKVLECCYARH
YGPDIWMEKVKYSSNDTLQVRFKRLVEWFSAHFLNYEGAEPIDWIDTVGRLVDYSLSDPEHMSKMTAGIM
PLFSRLTEQPLNELLSPSPNSLTSREIVTSDGIFSTGGVLYISLDGLSNPESARAISQLIMSDLTSCAGS
RYNSDDGDMSSHSRISIFVDEAHSAINNSMINLLAQGRAAQIALFICTQTISDFIAAANVETANRITGLC
NNYISLRVNDTPTQTLVVENFGKSPISTNMVTYTTGSETTLPHNNFSGSISERKQTTLEESIPKELLGQV
PKFHIVARLQDGRKVVGQIPIAVSENSMRPNTTLLEMFLKPAGKVTLRQNVGLDYLNKHLRKLH

  Protein domains


Predicted by InterproScan.

TraM recognition site of TraD and TraG (TraG-D_C)

(505-627)

  Protein structure



No available structure.




Host bacterium

ID   5690 GenBank   NZ_CP056366
Plasmid name   pRHBSTW-00658_2 Incompatibility group   IncFIB
Plasmid size   109317 bp Coordinate of oriT [Strand]   77447..77541 [+]
Host baterium   Citrobacter freundii strain RHBSTW-00658

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   merD, merA, merC, merP, merT, merR, arsA, arsD, arsR, arsC, arsB
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -