Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105210
Name   oriT_pRHBSTW-00269_4 in_silico
Organism   Citrobacter freundii strain RHBSTW-00269
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055546 (2686..2728 [+], 43 nt)
oriT length   43 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_pRHBSTW-00269_4
GCGCACCGTTTCTGAACAAAGTGGAGAAACGTCTAAGTGCGCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3587 GenBank   WP_064483254
Name   mobA_HV141_RS26390_pRHBSTW-00269_4 insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 43103.83 Da        Isoelectric Point: 6.7483

>WP_064483254.1 MULTISPECIES: mobilization protein MobA [Enterobacterales]
MASYHLSVKTGGKGSASPHADYIAREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERLNDGIHRDP
EQYFKRANTKEPERGGAKKARFGETLTERKEYLVAQRECWAALQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTVQLQAILERREAERFAEQSRDERDSVIDMTTSLREALSERDNLTPKQSSKPEPEQ
KAHSGRTFDFEKEPEVLNELVSDALKDIQDEIDLQSLVNDAMAEFQGIHQEMERQRERERLAEKQRQQEK
ERQRLAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   5648 GenBank   NZ_CP055546
Plasmid name   pRHBSTW-00269_4 Incompatibility group   -
Plasmid size   6665 bp Coordinate of oriT [Strand]   2686..2728 [+]
Host baterium   Citrobacter freundii strain RHBSTW-00269

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -