Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105181 |
| Name | oriT_pRHBSTW-00217_3  |
| Organism | Enterobacter hormaechei strain RHBSTW-00217 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP056749 (850..909 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pRHBSTW-00217_3
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3573 | GenBank | WP_058685396 |
| Name | Relaxase_HV129_RS23025_pRHBSTW-00217_3 |
UniProt ID | _ |
| Length | 498 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 498 a.a. Molecular weight: 55261.70 Da Isoelectric Point: 9.0935
>WP_058685396.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERILMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEATEAITRGLLTLASSGELKNRQDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRR
HPRTRAEYERGDGEKPAERTADCRADMVHHPDGVSAADRHEREHTVVAGAADNRQLHASSSAGRYPGEND
CPDVGSALSGEQRRPEVSYPAARDANRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQKTLELERQPQ
KTYRGPTL
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERILMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEATEAITRGLLTLASSGELKNRQDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRR
HPRTRAEYERGDGEKPAERTADCRADMVHHPDGVSAADRHEREHTVVAGAADNRQLHASSSAGRYPGEND
CPDVGSALSGEQRRPEVSYPAARDANRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQKTLELERQPQ
KTYRGPTL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1598 | GenBank | WP_163063187 |
| Name | WP_163063187_pRHBSTW-00217_3 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11810.62 Da Isoelectric Point: 9.5512
>WP_163063187.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Gammaproteobacteria]
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5619 | GenBank | NZ_CP056749 |
| Plasmid name | pRHBSTW-00217_3 | Incompatibility group | Col440II |
| Plasmid size | 4783 bp | Coordinate of oriT [Strand] | 850..909 [+] |
| Host baterium | Enterobacter hormaechei strain RHBSTW-00217 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |