Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 105159
• Name: oriT_pRHBSTW-00002_9
• Organism: Enterobacter roggenkampii strain RHBSTW-00002
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP058204 (573..606 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_pRHBSTW-00002_9
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HV027_RS23580_pRHBSTW-00002_9

• ID: 3565
• GenBank: WP_181239579
• Name: mobV_HV027_RS23580_pRHBSTW-00002_9
• UniProt ID: _
• Length: 322 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 322 a.a.
• Molecular weight: 36786.39 Da
• Isoelectric Point: 10.0529

>WP_181239579.1 MobV family relaxase [Enterobacter roggenkampii]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCSVSESTDQAMGRVRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPQQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDSQQKRLQSVTEPFKGLSREQ
MTHILTMAQTFQQQNHDREKQRQLEREQERQQRQKTDRGISR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 5597
• GenBank: NZ_CP058204
• Plasmid name: pRHBSTW-00002_9
• Incompatibility group: -
• Plasmid size: 3141 bp
• Coordinate of oriT [Strand]: 573..606 [+]
• Host baterium: Enterobacter roggenkampii strain RHBSTW-00002

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -