Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105156 |
| Name | oriT1_pRHBSTW-00002_3  |
| Organism | Enterobacter roggenkampii strain RHBSTW-00002 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP058198 (36153..36247 [+], 95 nt) |
| oriT length | 95 nt |
| IRs (inverted repeats) | 73..78, 85..90 (AAAAAA..TTTTTT) 73..78, 84..89 (AAAAAA..TTTTTT) 27..34, 37..44 (AGCGTGAT..ATCACGCT) 22..27, 36..41 (GTGATA..TATCAC) 13..19, 31..37 (TAAATCA..TGATTTA) |
| Location of nic site | 55..56 |
| Conserved sequence flanking the nic site |
GGTGTATAGC |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 95 nt
>oriT1_pRHBSTW-00002_3
TTTTTTTTCTTTTAAATCATTGTGATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAG
TTTTTTTTCTTTTAAATCATTGTGATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 5594 | GenBank | NZ_CP058198 |
| Plasmid name | pRHBSTW-00002_3 | Incompatibility group | IncFIB |
| Plasmid size | 108466 bp | Coordinate of oriT [Strand] | 36153..36247 [+]; 92049..92148 [+] |
| Host baterium | Enterobacter roggenkampii strain RHBSTW-00002 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | rffG |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |