Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105136 |
| Name | oriT_RHB03-C23|unnamed  |
| Organism | Escherichia fergusonii strain RHB03-C23 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP055809 (1..244 [+], 244 nt) |
| oriT length | 244 nt |
| IRs (inverted repeats) | 205..210, 213..218 (CGCCCC..GGGGCG) 144..149, 157..162 (ATAAAA..TTTTAT) 90..98, 108..116 (GCGGTGTTG..CAACACCGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 244 nt
>oriT_RHB03-C23|unnamed
TTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
TTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 5574 | GenBank | NZ_CP055809 |
| Plasmid name | RHB03-C23|unnamed | Incompatibility group | - |
| Plasmid size | 4103 bp | Coordinate of oriT [Strand] | 1..244 [+] |
| Host baterium | Escherichia fergusonii strain RHB03-C23 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |