Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 105097 |
| Name | oriT_pRHBSTW-00138_3  |
| Organism | Klebsiella quasipneumoniae strain RHBSTW-00138 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP058133 (19817..19866 [-], 50 nt) |
| oriT length | 50 nt |
| IRs (inverted repeats) | 7..14, 17..24 (GCAAAATT..AATTTTGC) |
| Location of nic site | 33..34 |
| Conserved sequence flanking the nic site |
GGTGTGGTGA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT_pRHBSTW-00138_3
AAATCTGCAAAATTAAAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
AAATCTGCAAAATTAAAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3548 | GenBank | WP_181352633 |
| Name | Relaxase_HV092_RS27265_pRHBSTW-00138_3 |
UniProt ID | _ |
| Length | 737 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 737 a.a. Molecular weight: 83387.09 Da Isoelectric Point: 8.4571
>WP_181352633.1 LPD7 domain-containing protein [Klebsiella quasipneumoniae]
MISKHIRNPDAKAAKHRRIIKLVEYILNPQTESATEKCVYHGARGFITAERSMQLGEMIALSEDATRSKN
TVEHFVLSLREGEKPTPEQVEEMITIWLRELGLSDCQIIYGLHEDTDNYHLHIAVNRMHPERLECIKING
GFSREAEHRAIALIEHAQGWKSEKNARYTVLPDGTLAYRAENGEAVPDAGWSADLALRRRQTDDRKELRR
RHERERRELEAVEATKAQRQAALDELRTRQLAEQLAQKTQQKAERVALRSALPASRARENVAISQRAIDI
ETRTGVQSVERTAKEVAGPILRSASSWAQLHAELAAVGCRFEREGSGALIWVGDTPVKASQACRKSSLPK
LEKRLGAYEPAPEGMVISERELEPLKPDAPRMSDYMRERRQYERERKQETAALRERHRLEQEAAWSRYEA
RRDALLAGHAGRNRYALGAVARAEWLAERDELIQRQSGERHRLRKRLPAFPGVEDWYRRLDEPGLAELWR
HRNSDQALLVGDADTPALPPRDIRAFVAEVRGRQVVFRRPDDAGPAFVDCGRRIDVTASNDRDAARAALQ
LAKAKWGRVTVSGPPEYQQMMLELAAEMGVQIANPELQERLNVEIERRRPVPVPTAKPDWSRYRSVASGG
VPSPARTTGERDPRWPQFERAMLQIGQFELGVSAVVLMGQLEIAKGTVTQRLDAAERSGRSVDDVARELA
TAAARAEAEAFQRQLDAAEREQARPDMHPDEPEGPGW
MISKHIRNPDAKAAKHRRIIKLVEYILNPQTESATEKCVYHGARGFITAERSMQLGEMIALSEDATRSKN
TVEHFVLSLREGEKPTPEQVEEMITIWLRELGLSDCQIIYGLHEDTDNYHLHIAVNRMHPERLECIKING
GFSREAEHRAIALIEHAQGWKSEKNARYTVLPDGTLAYRAENGEAVPDAGWSADLALRRRQTDDRKELRR
RHERERRELEAVEATKAQRQAALDELRTRQLAEQLAQKTQQKAERVALRSALPASRARENVAISQRAIDI
ETRTGVQSVERTAKEVAGPILRSASSWAQLHAELAAVGCRFEREGSGALIWVGDTPVKASQACRKSSLPK
LEKRLGAYEPAPEGMVISERELEPLKPDAPRMSDYMRERRQYERERKQETAALRERHRLEQEAAWSRYEA
RRDALLAGHAGRNRYALGAVARAEWLAERDELIQRQSGERHRLRKRLPAFPGVEDWYRRLDEPGLAELWR
HRNSDQALLVGDADTPALPPRDIRAFVAEVRGRQVVFRRPDDAGPAFVDCGRRIDVTASNDRDAARAALQ
LAKAKWGRVTVSGPPEYQQMMLELAAEMGVQIANPELQERLNVEIERRRPVPVPTAKPDWSRYRSVASGG
VPSPARTTGERDPRWPQFERAMLQIGQFELGVSAVVLMGQLEIAKGTVTQRLDAAERSGRSVDDVARELA
TAAARAEAEAFQRQLDAAEREQARPDMHPDEPEGPGW
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5535 | GenBank | NZ_CP058133 |
| Plasmid name | pRHBSTW-00138_3 | Incompatibility group | - |
| Plasmid size | 55155 bp | Coordinate of oriT [Strand] | 19817..19866 [-] |
| Host baterium | Klebsiella quasipneumoniae strain RHBSTW-00138 |
Cargo genes
| Drug resistance gene | sul1, qacE, ant(3'')-Ia, blaOXA-10, ant(2'')-Ia |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIE9 |