Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104998 |
| Name | oriT_pJIR3844  |
| Organism | Clostridium perfringens strain EHE-NE18 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP025503 (12907..13056 [-], 150 nt) |
| oriT length | 150 nt |
| IRs (inverted repeats) | 133..138, 142..147 (ATACAT..ATGTAT) 117..123, 137..143 (ATTATAT..ATATAAT) 119..125, 129..135 (TATATAT..ATATATA) 121..127, 129..135 (TATATAT..ATATATA) 123..128, 130..135 (TATATA..TATATA) 112..118, 122..128 (TATATAT..ATATATA) 112..118, 120..126 (TATATAT..ATATATA) 112..117, 119..124 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 150 nt
>oriT_pJIR3844
AAGGAACTTTACAGGGAACTTTAAAAATTTAAAATGGTATAAAAGTTCCCTGTATAAATATAAGTGTTTTTAAGGTATATATCAGTATTAGTTCTTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
AAGGAACTTTACAGGGAACTTTAAAAATTTAAAATGGTATAAAAGTTCCCTGTATAAATATAAGTGTTTTTAAGGTATATATCAGTATTAGTTCTTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 3454 | GenBank | WP_110439934 |
| Name | tcpA_CYK96_RS16340_pJIR3844 |
UniProt ID | _ |
| Length | 527 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 527 a.a. Molecular weight: 60234.31 Da Isoelectric Point: 6.1216
>WP_110439934.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEIENGFNAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDESEDKKGGLDLNKEKLIDNDLMNNVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
MSSDWEKKVNQEIENGFNAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDESEDKKGGLDLNKEKLIDNDLMNNVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5436 | GenBank | NZ_CP025503 |
| Plasmid name | pJIR3844 | Incompatibility group | - |
| Plasmid size | 69606 bp | Coordinate of oriT [Strand] | 12907..13056 [-] |
| Host baterium | Clostridium perfringens strain EHE-NE18 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |