Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104938
Name   oriT_CD3406|unnamed6 in_silico
Organism   Serratia proteamaculans strain CD3406
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP117174 (462..504 [-], 43 nt)
oriT length   43 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_CD3406|unnamed6
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3476 GenBank   WP_219017300
Name   mobA_JET59_RS28030_CD3406|unnamed6 insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 43200.80 Da        Isoelectric Point: 6.0840

>WP_219017300.1 MobA/MobL family protein [Serratia proteamaculans]
MASYHLSVKTGGKGSASPHADYIARDGKYAREKDSDLEYKESGNMPAWAEHKPTEFWKAADTFERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANNKEPERGGAKKVRFGETPTERKEHLVAQRERWADLQNTHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDADQLQAILDRREAERQVQQCHDERDGVIDVTTSLREALSEQDNLRPKPEQKSEPEQ
DAVSGRVFDFEKEPEKLSELVSDAMKDMQEEIDFQSLVNDAMAEFQGIHQEMERQKERNALAEKQRQQEK
ERQRIAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   5376 GenBank   NZ_CP117174
Plasmid name   CD3406|unnamed6 Incompatibility group   -
Plasmid size   7000 bp Coordinate of oriT [Strand]   462..504 [-]
Host baterium   Serratia proteamaculans strain CD3406

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -