Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104937
Name   oriT_CD3406|unnamed5 in_silico
Organism   Serratia proteamaculans strain CD3406
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP117173 (7298..7339 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_CD3406|unnamed5
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3475 GenBank   WP_040113349
Name   mobA_JET59_RS28015_CD3406|unnamed5 insolico UniProt ID   A0A734ICP3
Length   365 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 365 a.a.        Molecular weight: 42217.70 Da        Isoelectric Point: 6.3344

>WP_040113349.1 MULTISPECIES: mobilization protein MobA [Enterobacterales]
MASYHLSVKTGGKGSASPHADYISREGKYAREKDSDLEHKESGNMPAWAAHKPTEFWKAADTFERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKAPERGGAKKARFGETPTERKEHLVAQRERWADLQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTAQLQAILERRDAERQAEQSRDERDSVIDVTTSLREAISERDNLTIKQEQKPEPAQ
EDTSGRVFDFEKEPEKLNALVSDALKDVQDEIDLQSLVNETMAEFQGIHQEMERLAEKQRQQEKEQQRLA
EQTRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure


Source ID Structure
AlphaFold DB A0A734ICP3


Host bacterium

ID   5375 GenBank   NZ_CP117173
Plasmid name   CD3406|unnamed5 Incompatibility group   ColE10
Plasmid size   8500 bp Coordinate of oriT [Strand]   7298..7339 [+]
Host baterium   Serratia proteamaculans strain CD3406

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -