Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104819
Name   oriT_pAM01 in_silico
Organism   Aminobacter sp. MSH1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP026266 (64214..64250 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)      22..27, 32..37  (CGTCGC..GCGACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_pAM01
GGGTCCAAGGGCGCAATTATACGTCGCTGACGCGACG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3416 GenBank   WP_108610369
Name   traA_CO731_RS26705_pAM01 insolico UniProt ID   _
Length   1100 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1100 a.a.        Molecular weight: 122823.15 Da        Isoelectric Point: 10.0350

>WP_108610369.1 Ti-type conjugative transfer relaxase TraA [Aminobacter sp. MSH1]
MAVPHFSVAIISRGNGRSAVLSAAYRHCAKMEYEREARSIDYTRKQGLLHEEFLAPPDAPQWVSSLIADR
SVSGAAEAFWNKVEAFEKRSDAQLAKDITMALPLELSAKQNIALVRDFVEQHILAKGMVADWVYHDAPGN
PHVHLMMTLRPLTEDGFGAKKIAVIGENGEVLRNQAGKIVYELWAGGVADFTAFRDAWFTTQNKHLALGG
IDLRVDGRSYAERGIDLVPIIHVGVGAQAIQRKSVSDGSQPSLERIELFEARRKENAGRILKRPEIVLEM
ISSEKSVFDERDIAKILHRYVDDAGTFQHLMVRILQSPEVLRIERNGIDLATGERLRSRYTTRELIRLEA
RMAKQSLRLLQRATHGVQEKVLDSVFARHSRLSQEQRVAIEHVAGAGKIAAVVGRAGAGKTTMMKAAREA
WELAGYRVVGAALAGKAAEGLEKEAGIVSRTLASWELRWQEGRDLLDARTVFVLDEAGMVASKQMALVVE
AATRAGAKLVLIGDPDQLQPIEAGAAFRAIADRIGYAELETIYRQRDDWMRAASLDLARGRVDEAVSAYR
QHGRVLGSELKAQAIDSLIADWNRDYDPAETSLILAHLRRDVRILNDMARERLVERGIVGEGHAFRTEDG
LRQFDAGDQIVFLKNETSLGVKNGMIGRVMDAAANRIVAAIGEGEHRRLVTVEQRFYHNIDHGYATTIHK
SQGATVDRVKVLASLSLDRHLTYVAMTRHREDMSLYYGRRSFGLNGGLIAILARRNAKETTLDYEHGTLY
RQALRFAENRGLNFVRIARTLVRDRLDWTLRQRQRLADLTQQMRAHGERLGLLQPPSTQTWKAAEPMVAG
VTLFARSLADVVEERLLADPALAKQWDEASTRFRYIFTDPETAFRSMNFDAVLTDAKVAKQTLDRLVSEP
GSIGPLKGRAGILASRADKEARRVAEVNVPALKRDIERYLQLRQTAAERIEREEQSLRHRVSIDIPALSL
AARSVLEKIRDAIARNDLAAARGHALSSREAKLEIDGFNRAVTERFGERALLANTAREPSGTLFDKAAAG
LRPGEREKLHQAWPVMRAAQQIAAHERTAQTLKQAEHLRLAQRQSTAWKQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-243)

AAA domain (AAA_30)

(382-565)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(855-951)


  Protein structure



No available structure.




Host bacterium

ID   5257 GenBank   NZ_CP026266
Plasmid name   pAM01 Incompatibility group   -
Plasmid size   367312 bp Coordinate of oriT [Strand]   64214..64250 [+]
Host baterium   Aminobacter sp. MSH1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -