Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104814 |
| Name | oriT_pP83_h  |
| Organism | Phaeobacter inhibens strain P83 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP010607 (18425..18444 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pP83_h
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3413 | GenBank | WP_102891961 |
| Name | mobQ_PhaeoP83_RS22140_pP83_h |
UniProt ID | _ |
| Length | 432 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 432 a.a. Molecular weight: 48716.76 Da Isoelectric Point: 6.2698
>WP_102891961.1 MobQ family relaxase [Phaeobacter inhibens]
MASYHLSVKTIKRSAGRTATAAGAYRAGERIECQREGRVHDYTRKQGIEETFIVAPENAPAWAQDRSKLW
NEAEASETRRNSVTAREWELALPSEISAEDRSQITREFAEVLVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPEGFTAKTRVLDSAKTGGVEIEQMRGVWAELQNRALERVGEVERVDHRSLEKQREAAQERGD
TLSAEELDRDPELKLGPAANSMERREKAAAEREGREYKPVTERGAVVHAARQARAAFREMRERVEIAREI
YGVERDAGQGRVSAGLAALRAATSKGRVTDDVRERLARITDRGQDRGGQSDEEQSKGRNYARDRLKEIMD
KDAGRDGQAAVHKLDGHIDPELGDEAGRAQRKPSVNERLKDVLNKPREKLEIEDGRDQEKDQEVENDREI
DREIDRDPGLSH
MASYHLSVKTIKRSAGRTATAAGAYRAGERIECQREGRVHDYTRKQGIEETFIVAPENAPAWAQDRSKLW
NEAEASETRRNSVTAREWELALPSEISAEDRSQITREFAEVLVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPEGFTAKTRVLDSAKTGGVEIEQMRGVWAELQNRALERVGEVERVDHRSLEKQREAAQERGD
TLSAEELDRDPELKLGPAANSMERREKAAAEREGREYKPVTERGAVVHAARQARAAFREMRERVEIAREI
YGVERDAGQGRVSAGLAALRAATSKGRVTDDVRERLARITDRGQDRGGQSDEEQSKGRNYARDRLKEIMD
KDAGRDGQAAVHKLDGHIDPELGDEAGRAQRKPSVNERLKDVLNKPREKLEIEDGRDQEKDQEVENDREI
DREIDRDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3352 | GenBank | WP_102891963 |
| Name | t4cp2_PhaeoP83_RS22150_pP83_h |
UniProt ID | _ |
| Length | 550 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 550 a.a. Molecular weight: 60622.50 Da Isoelectric Point: 6.7781
>WP_102891963.1 type IV secretory system conjugative DNA transfer family protein [Phaeobacter inhibens]
MRSVMLFVGGLARFFYRVIATPIMFGWMIGAMVFGAMLGTLVATPFIFAFFDQEPGESAWQWIVFGPFIL
IGAVFGFQYWRMRSGADAFFGLTGDSHGSARFASRKELKKLQGGDGLLIGRNPGTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLGVDRSVLVIDPKGENARIAGEARRRLGTTHVLDPFEVSGMPSAAYNPLDRLSP
DSLDLGEDAASLTEALVMDPPGQVSEAHWNEEAKAILGGLIMFCVCHEDRDRRTLATVREYLTLPPDRLK
ALLELMQDSDAASGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVLSRSDFHFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVGAQGPSQRLKPPALFLLDEFAALGRLEAVERAMG
LMAGYGLQLWPILQDMSQLRDLYGERANTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGYQTDSYKPG
DNPSFSNNLTGRDLLTPDEIMQMPPNVQLLRVQGQPSALAQKLRYYADPEFKGLFVPQDQ
MRSVMLFVGGLARFFYRVIATPIMFGWMIGAMVFGAMLGTLVATPFIFAFFDQEPGESAWQWIVFGPFIL
IGAVFGFQYWRMRSGADAFFGLTGDSHGSARFASRKELKKLQGGDGLLIGRNPGTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLGVDRSVLVIDPKGENARIAGEARRRLGTTHVLDPFEVSGMPSAAYNPLDRLSP
DSLDLGEDAASLTEALVMDPPGQVSEAHWNEEAKAILGGLIMFCVCHEDRDRRTLATVREYLTLPPDRLK
ALLELMQDSDAASGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVLSRSDFHFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVGAQGPSQRLKPPALFLLDEFAALGRLEAVERAMG
LMAGYGLQLWPILQDMSQLRDLYGERANTFIANAGVQQVFGVNDFETAKWLSQMIGQETTGYQTDSYKPG
DNPSFSNNLTGRDLLTPDEIMQMPPNVQLLRVQGQPSALAQKLRYYADPEFKGLFVPQDQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5252 | GenBank | NZ_CP010607 |
| Plasmid name | pP83_h | Incompatibility group | - |
| Plasmid size | 21529 bp | Coordinate of oriT [Strand] | 18425..18444 [+] |
| Host baterium | Phaeobacter inhibens strain P83 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |