Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104812 |
| Name | oriT_pP88_i  |
| Organism | Phaeobacter inhibens strain P88 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP010734 (5769..5788 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pP88_i
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3411 | GenBank | WP_102884834 |
| Name | mobQ_PhaeoP88_RS23200_pP88_i |
UniProt ID | _ |
| Length | 411 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 411 a.a. Molecular weight: 45856.38 Da Isoelectric Point: 8.1806
>WP_102884834.1 MobQ family relaxase [Phaeobacter inhibens]
MASYHLSVKTIKRSAGRSSTAAAAYRAGDRIECQREGRVHDYSRKQGVEETFIVAPENAPAWAQDRSSLW
NEAEATETRRNSVTAREWELALPSEITAEDRSQITREFAEQLVERYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAEGFTTKTRVLDSAKTGGVEIEQMRGVWAELQNRALERVGEVERVDHRSLEAQREAAQERGD
TLSAEELDRDPELKLGPAANSMERREKAAAARDGRDYIPVTERGAAVHTARQARAAFREVRERLDRARKT
YGAERESGQGRVSAGLAALREAASKGHGVNRDVGTTEQRLAQIVGRSEPKTSKRASDHRADLSERLSKTL
GRTPGTERKGADDKNRSIEDRLDDVLNKPQTSAGSAGEDKRERDKEEDAPHRKDRGTSHER
MASYHLSVKTIKRSAGRSSTAAAAYRAGDRIECQREGRVHDYSRKQGVEETFIVAPENAPAWAQDRSSLW
NEAEATETRRNSVTAREWELALPSEITAEDRSQITREFAEQLVERYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAEGFTTKTRVLDSAKTGGVEIEQMRGVWAELQNRALERVGEVERVDHRSLEAQREAAQERGD
TLSAEELDRDPELKLGPAANSMERREKAAAARDGRDYIPVTERGAAVHTARQARAAFREVRERLDRARKT
YGAERESGQGRVSAGLAALREAASKGHGVNRDVGTTEQRLAQIVGRSEPKTSKRASDHRADLSERLSKTL
GRTPGTERKGADDKNRSIEDRLDDVLNKPQTSAGSAGEDKRERDKEEDAPHRKDRGTSHER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3350 | GenBank | WP_199539518 |
| Name | t4cp2_PhaeoP88_RS23165_pP88_i |
UniProt ID | _ |
| Length | 555 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 555 a.a. Molecular weight: 61268.17 Da Isoelectric Point: 6.3765
>WP_199539518.1 type IV secretory system conjugative DNA transfer family protein [Phaeobacter inhibens]
MRIIFSIFGFIQAFGLALFAVPLLILLWLVYMAIATVVGWILVGLTQYYVFGYFDLNNPDTLGDWLLHIF
FIGLCWTVATWFFSQHTGLSGLSGPSSDSHGSARFASAKELRAMSSDKPESLLIGRNPKTGKLMRYDGPA
HLLTLAPTRAGKGVGTVIPNLLLSERSVLVIDPKGENAQITGTARKQFGAVHVLDPFGVTEFETACYNPL
DRLRPDSLDLGEDAATLTEALVMDPPGEASEAHWNEEAKALLSGFIMFCVCHEPKDRRSLGTVREYLTLP
PERLRELLELMQESDAASGLIARAANRFVGKADREAASVMSNAQRHTHFLDSPRINHVTSKSDFNFSQLM
REVGSVFLVLPPNRLDAYSRWLRLLVSQALQDIARASETRQLQTSGSEASGRPRASMLFLLDEFAALGRL
EAVERAMGLMAGYGLQLWPILQDMSQLKDLYGKRAGTFIANAGVQQVFGVNDYETAKWLSQMIGQETRGY
TTTSRKPGDSTSISQNVTARDLVTPDEIMQLPPHLQLLRVQGHPTAVAAKLKYYADDEFSGLFEG
MRIIFSIFGFIQAFGLALFAVPLLILLWLVYMAIATVVGWILVGLTQYYVFGYFDLNNPDTLGDWLLHIF
FIGLCWTVATWFFSQHTGLSGLSGPSSDSHGSARFASAKELRAMSSDKPESLLIGRNPKTGKLMRYDGPA
HLLTLAPTRAGKGVGTVIPNLLLSERSVLVIDPKGENAQITGTARKQFGAVHVLDPFGVTEFETACYNPL
DRLRPDSLDLGEDAATLTEALVMDPPGEASEAHWNEEAKALLSGFIMFCVCHEPKDRRSLGTVREYLTLP
PERLRELLELMQESDAASGLIARAANRFVGKADREAASVMSNAQRHTHFLDSPRINHVTSKSDFNFSQLM
REVGSVFLVLPPNRLDAYSRWLRLLVSQALQDIARASETRQLQTSGSEASGRPRASMLFLLDEFAALGRL
EAVERAMGLMAGYGLQLWPILQDMSQLKDLYGKRAGTFIANAGVQQVFGVNDYETAKWLSQMIGQETRGY
TTTSRKPGDSTSISQNVTARDLVTPDEIMQLPPHLQLLRVQGHPTAVAAKLKYYADDEFSGLFEG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5250 | GenBank | NZ_CP010734 |
| Plasmid name | pP88_i | Incompatibility group | - |
| Plasmid size | 7362 bp | Coordinate of oriT [Strand] | 5769..5788 [+] |
| Host baterium | Phaeobacter inhibens strain P88 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |