Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104802 |
| Name | oriT_pP129_f  |
| Organism | Phaeobacter gallaeciensis strain P129 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP021046 (12179..12198 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pP129_f
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3405 | GenBank | WP_096709395 |
| Name | mobQ_PhaeoP129_RS20740_pP129_f |
UniProt ID | _ |
| Length | 427 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 427 a.a. Molecular weight: 48261.26 Da Isoelectric Point: 6.1368
>WP_096709395.1 MobQ family relaxase [Phaeobacter gallaeciensis]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWATDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEADGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAAVERGD
ELAAEELARDPELKLGPAANSMERRAKAMAERQGQEYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGTAREEGQGRVSAGLAALRAATAKDRDRNPEDFRERLARVVGGSRDQDDTPKPEGRNYARERLKEIMEK
DAGRDGQAAVHKLDGHSEYDLGEDTGRQARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRDID
RDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWATDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEADGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAAVERGD
ELAAEELARDPELKLGPAANSMERRAKAMAERQGQEYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGTAREEGQGRVSAGLAALRAATAKDRDRNPEDFRERLARVVGGSRDQDDTPKPEGRNYARERLKEIMEK
DAGRDGQAAVHKLDGHSEYDLGEDTGRQARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRDID
RDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3341 | GenBank | WP_096709396 |
| Name | t4cp2_PhaeoP129_RS20755_pP129_f |
UniProt ID | _ |
| Length | 556 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 556 a.a. Molecular weight: 61351.27 Da Isoelectric Point: 6.4410
>WP_096709396.1 type IV secretory system conjugative DNA transfer family protein [Phaeobacter gallaeciensis]
MRSVMLVFGRLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESAWQWLVFGPFML
IGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLERGKGQEDAGLLIGRNPHTGRLLRYDGPA
HLITLAPTRAGKGVGTVIPNLLATERSVLVIDPKGENARIAGEARRRIGTVHVLDPFEVSGHPSAAYNPL
DRLTLDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLP
PEKLRALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLAHSDFAFSDLR
HRITSVFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERPQSASEGRSERLTAPTLFLLDEFAALGRLEA
VERAMGLMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQT
DSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFAGLFIPEAQ
MRSVMLVFGRLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESAWQWLVFGPFML
IGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLERGKGQEDAGLLIGRNPHTGRLLRYDGPA
HLITLAPTRAGKGVGTVIPNLLATERSVLVIDPKGENARIAGEARRRIGTVHVLDPFEVSGHPSAAYNPL
DRLTLDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLP
PEKLRALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLAHSDFAFSDLR
HRITSVFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERPQSASEGRSERLTAPTLFLLDEFAALGRLEA
VERAMGLMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQT
DSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFAGLFIPEAQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5241 | GenBank | NZ_CP021046 |
| Plasmid name | pP129_f | Incompatibility group | - |
| Plasmid size | 15022 bp | Coordinate of oriT [Strand] | 12179..12198 [+] |
| Host baterium | Phaeobacter gallaeciensis strain P129 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |