Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104789
• Name: oriT_pMF1298-11
• Organism: Lactiplantibacillus plantarum strain MF1298
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP013162 (2534..2573 [+], 40 nt)
• oriT length: 40 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 40 nt

>oriT_pMF1298-11
CACTTTGCGAAGTAAAGTATAGTGGGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_ASV54_RS17380_pMF1298-11

• ID: 3398
• GenBank: WP_071665548
• Name: mobV_ASV54_RS17380_pMF1298-11
• UniProt ID: _
• Length: 367 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 367 a.a.
• Molecular weight: 42690.17 Da
• Isoelectric Point: 9.8880

>WP_071665548.1 MobV family relaxase [Lactiplantibacillus plantarum]
MSFVVARMQKLKADNLVGLGNHDQRKTSNHSNQDIDVSRSHLNYDLVAGRTQNFKTDIQNYIDNRKASQR
AVRKDAVLANEWVITSDKGFFEQLDERQTRAYFETAKQYFADNFGDENIRYAIVHLDESTPHMHMGIVPF
DNENKLSAKRVFNREALQKVQDELPEFLQAKGFKIERGQKDTKRKNLTVPEYKAMQDNLAENKQELETVK
ADTKKQRQEFEDFKKSDFDVTNVETLQPRFKKGYVLVKKDDFEQMKQGAIYAKSAFIDSLHAKSDAERAH
DSEIKASSRALELEMKNDKLEAENNKLRTQLNHAQDLIKRMFKVLKEKLGDKVHMKPETWHKIGLKAPNE
PDKQSKKRPERNTGLSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 5228
• GenBank: NZ_CP013162
• Plasmid name: pMF1298-11
• Incompatibility group: -
• Plasmid size: 4130 bp
• Coordinate of oriT [Strand]: 2534..2573 [+]
• Host baterium: Lactiplantibacillus plantarum strain MF1298

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -