Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104714
Name   oriT_pNSUI060b in_silico
Organism   Streptococcus suis strain NSUI060
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP012913 (96..136 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT_pNSUI060b
CACATTTATGAAGTAAAGTATAATGAGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3370 GenBank   WP_226996454
Name   mobV_APQ97_RS11560_pNSUI060b insolico UniProt ID   _
Length   496 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 496 a.a.        Molecular weight: 57722.23 Da        Isoelectric Point: 5.7336

>WP_226996454.1 MobV family relaxase [Streptococcus suis]
MVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSHLNYELTGRDCSVSYEKQIKDYVNENKISNRAI
RKDAVLCDEWIITSDKSFFEKLSEEETREFFETAKNYFAENYGEDNIAYASVHLDESTPHMHMGVVPFQD
GKLSSKAMFDKEELKKIQEDLPKYMNDHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKQLVLEYGAPE
YVNHQEELVTKEEYQEAYGVFQNELGAWLDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLEDEI
RTLNEVLKEKYEELDKIELRASESLSELSGVEGYINNLEKHSNALESKIGGLENEYLRLAKQNARLSDLK
IMSEKELAEIQPKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKELENDQLRRQMPLRSSKNGFEASL
QRAKDKTKGESIDRLKSEIRGLKNENSVLRQQNDKMLGKLIEFMPDKALKNFVSELKAIQPIVKIVKRVI
EKGLGL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-191)


  Protein structure



No available structure.




Host bacterium

ID   5153 GenBank   NZ_CP012913
Plasmid name   pNSUI060b Incompatibility group   -
Plasmid size   5581 bp Coordinate of oriT [Strand]   96..136 [+]
Host baterium   Streptococcus suis strain NSUI060

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -