Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104703 |
| Name | oriT_pP73D  |
| Organism | Celeribacter indicus strain P73 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP004397 (16413..16432 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pP73D
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3361 | GenBank | WP_043872391 |
| Name | mobQ_P73_RS24140_pP73D |
UniProt ID | A0A0B5E1L9 |
| Length | 430 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 430 a.a. Molecular weight: 48793.92 Da Isoelectric Point: 6.8407
>WP_043872391.1 MobQ family relaxase [Celeribacter indicus]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREDALKRGD
ELSAEELDRDPELKLGPAANSMERRAKAMAERQGREYKPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREAGQGRVSAGLAALRAATAKDRDRDRNPEDFRERLARVVARSRDQGDTPKPEDRNYARERLKEIM
EKDAGHDGQAAVHKLDGHSEYDLGEETGRAVRKPSVNERLKDVLNKPRERLEIEDEREQERGDDENENTR
DRDRGEGHSL
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREDALKRGD
ELSAEELDRDPELKLGPAANSMERRAKAMAERQGREYKPVTERGAVVHAARQARAAFREMRARLELARET
YGIEREAGQGRVSAGLAALRAATAKDRDRDRNPEDFRERLARVVARSRDQGDTPKPEDRNYARERLKEIM
EKDAGHDGQAAVHKLDGHSEYDLGEETGRAVRKPSVNERLKDVLNKPRERLEIEDEREQERGDDENENTR
DRDRGEGHSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0B5E1L9 |
T4CP
| ID | 3299 | GenBank | WP_043872395 |
| Name | t4cp2_P73_RS24150_pP73D |
UniProt ID | _ |
| Length | 552 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 552 a.a. Molecular weight: 60120.97 Da Isoelectric Point: 6.5975
>WP_043872395.1 type IV secretory system conjugative DNA transfer family protein [Celeribacter indicus]
MRALSLAFWRLFRFIQVLIVTPILVGGTLVFLLIGAAVGAVVATPLVFAFFDQAPGESLANWLVLIPCMV
IGAVVGVAMWFQMSGAETFFGNLVGASHGSARFAGKRELKALEQAKGLLIGRNPRTGKLLSYDGPAHLLT
LAPTRAGKGVGTVIPNLLAADRSVLVIDPKGENARIAGAARERFGTVHVLDPFEVSGRSSSAYNPLDRLS
ADSPDLSEDAASLADALVVDPAHQTGDAHWNEEAKALIGGLIMFCAAHEEPERRNLGSVREYLTLPPDRL
KALLELMQESESADGLIARAANRFVGKAEREAASVLSNAQRHTHFLDSPRIAKCMARSDFTFSDLRHRIT
SVFLVLPPNRLDAYSRWLRLLVSQALQDIARDAERPQGASEGRSERLKAPALFLLDEFAALGRLEAVERA
MGLMAGYGLQLWPILQDMSQLRDLYGQRAATFVANAGVQQVFGVNDYDTAKWLSQTMGQETIGYQTESRK
PGDMPTTGIQVTGRDLLTPDEIMQFQPELQLLRVQGQATAVAQKLRYYADPEFAGLFTPDAR
MRALSLAFWRLFRFIQVLIVTPILVGGTLVFLLIGAAVGAVVATPLVFAFFDQAPGESLANWLVLIPCMV
IGAVVGVAMWFQMSGAETFFGNLVGASHGSARFAGKRELKALEQAKGLLIGRNPRTGKLLSYDGPAHLLT
LAPTRAGKGVGTVIPNLLAADRSVLVIDPKGENARIAGAARERFGTVHVLDPFEVSGRSSSAYNPLDRLS
ADSPDLSEDAASLADALVVDPAHQTGDAHWNEEAKALIGGLIMFCAAHEEPERRNLGSVREYLTLPPDRL
KALLELMQESESADGLIARAANRFVGKAEREAASVLSNAQRHTHFLDSPRIAKCMARSDFTFSDLRHRIT
SVFLVLPPNRLDAYSRWLRLLVSQALQDIARDAERPQGASEGRSERLKAPALFLLDEFAALGRLEAVERA
MGLMAGYGLQLWPILQDMSQLRDLYGQRAATFVANAGVQQVFGVNDYDTAKWLSQTMGQETIGYQTESRK
PGDMPTTGIQVTGRDLLTPDEIMQFQPELQLLRVQGQATAVAQKLRYYADPEFAGLFTPDAR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5142 | GenBank | NZ_CP004397 |
| Plasmid name | pP73D | Incompatibility group | - |
| Plasmid size | 19262 bp | Coordinate of oriT [Strand] | 16413..16432 [+] |
| Host baterium | Celeribacter indicus strain P73 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |