Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104701
Name   oriT_pMP1046A in_silico
Organism   Ligilactobacillus salivarius strain JCM1046
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP007647 (109159..109212 [-], 54 nt)
oriT length   54 nt
IRs (inverted repeats)      16..22, 28..34  (TCCCCAC..GTGGGGA)
 1..7, 9..15  (GTTGATA..TATCAAC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 54 nt

>oriT_pMP1046A
GTTGATACTATCAACTCCCCACCGTGCGTGGGGACAGTTTTCCTTATGCTCTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3359 GenBank   WP_052399075
Name   mobP2_LSJ_RS09530_pMP1046A insolico UniProt ID   A0A089QEK7
Length   781 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 781 a.a.        Molecular weight: 91896.64 Da        Isoelectric Point: 10.0419

>WP_052399075.1 MobP2 family relaxase [Ligilactobacillus salivarius]
MSESPAITVMLDYTTPYAKFVDYTNRKEATEVEINQEIEERLVEGVSQETANKISKEVPEQNLDYVGYID
YMKRSYATKEDSAEKTGIFTSNTLNADIEEAKNIKNMLQKARSNNSILWRGVISFDNDFLAQNGLYDPKT
KKVDQVGIKKAIQKVMPNVISREKLSDSAFWWGNIHLNTDNVHAHIGISEIESARPTFFYEARHRKERKG
KFEQKTLKGIKSQVYNALLKEKSRDQNLRKEQLLANLREKLLNKIGNQEISKLDELERFYVEQALNHLPE
GKRLRYGSNAKDFQISKFFIDRYLERELEKSNDFEKYKVETEKLLEDRKQAYTKADNNDMQQFVDQRIDD
LKERLGNRTLKYLKGIKPQDLLENQSNIEKFSKFNQRAIHTRDPEATLIHSEKMWKKLGYQVDKDKAKEI
KVNVPVKNKSEQDKLGSKFKEEKFFDVRFVTANNRQNNLDLKMLTAMTKDDLNELIKISQGVAKTRPEDK
KLRQEVGIFKYALKQKMLQERSRELGTIKKLLGNYQNPVESDKLFLNYKQQQIKELQELVKLQQTPKSKL
SKNEQVKKLKLQNKYLDQVQVPIKKVDEKVYQNQVMLLTEERKLARQVEDQSIFQIIKGEKETKNGYIDE
LDTKIGIITAKYKINHNNKLIKKSNNPDEKKQYRQENGKYFQDLKKSYQKLNPSEEKETNIDFEKLANSL
KVENELRWDYPHDSTFRKKVSQKSDQQRHNHQLRIKGNFKPVSKDLAKGISLITKDDTTKKTQLLRQKAR
DDREEEKERSI

  Protein domains


Predicted by InterproScan.

MobL relaxases (MobL)

(5-375)


  Protein structure


Source ID Structure
AlphaFold DB A0A089QEK7


Host bacterium

ID   5140 GenBank   NZ_CP007647
Plasmid name   pMP1046A Incompatibility group   -
Plasmid size   219748 bp Coordinate of oriT [Strand]   109159..109212 [-]
Host baterium   Ligilactobacillus salivarius strain JCM1046

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIC1