Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104693
Name   oriT_pKB290-2 in_silico
Organism   Levilactobacillus brevis KB290
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_020821 (27281..27301 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pKB290-2
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3357 GenBank   WP_041816186
Name   mobQ_LVISKB_RS12235_pKB290-2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80517.94 Da        Isoelectric Point: 8.7700

>WP_041816186.1 MobQ family relaxase [Levilactobacillus brevis]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPAWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVVIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIDDTPTQHEGINSNRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKELLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETESEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKEAKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQTITRAVKDLRTIMAVKQVIQTQYQEVLR
KAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFSTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEY
YLKTAFSDAIMAALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   5132 GenBank   NC_020821
Plasmid name   pKB290-2 Incompatibility group   -
Plasmid size   35388 bp Coordinate of oriT [Strand]   27281..27301 [+]
Host baterium   Levilactobacillus brevis KB290

Cargo genes

Drug resistance gene   ClpL
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -