Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104692 |
| Name | oriT_pSP291-3  |
| Organism | Cronobacter sakazakii SP291 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_020262 (4177..4236 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pSP291-3
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGAAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGAAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3356 | GenBank | WP_015387219 |
| Name | Relaxase_CSSP291_RS22775_pSP291-3 |
UniProt ID | _ |
| Length | 224 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 224 a.a. Molecular weight: 24809.01 Da Isoelectric Point: 6.2813
>WP_015387219.1 relaxase/mobilization nuclease domain-containing protein [Cronobacter sakazakii]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLTLASSGELKTRQDVTEALERSGFEVVRTTKS
SISIADPDGGETSD
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLTLASSGELKTRQDVTEALERSGFEVVRTTKS
SISIADPDGGETSD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1493 | GenBank | WP_015387218 |
| Name | WP_015387218_pSP291-3 |
UniProt ID | _ |
| Length | 114 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 114 a.a. Molecular weight: 12718.66 Da Isoelectric Point: 10.1012
>WP_015387218.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacteriaceae]
MSEKRSKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQI
ARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MSEKRSKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQI
ARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5131 | GenBank | NC_020262 |
| Plasmid name | pSP291-3 | Incompatibility group | ColRNAI |
| Plasmid size | 4422 bp | Coordinate of oriT [Strand] | 4177..4236 [-] |
| Host baterium | Cronobacter sakazakii SP291 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |