Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104680
Name   oriT_pD in_silico
Organism   Levilactobacillus brevis strain YSJ3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP092268 (26945..26965 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pD
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3349 GenBank   WP_239309829
Name   mobQ_MD222_RS12640_pD insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80591.45 Da        Isoelectric Point: 9.4586

>WP_239309829.1 MobQ family relaxase [Levilactobacillus brevis]
MAIFHMSFSNISAGKGRSEIASAAYRSGEKLFDDQEGRHYFYARSVIPESFILTPKNAPAWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDQGMVADVAIHRDHQDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKMYTVTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETESEQTVFKGSELNERLMNIRDDLSTQKLLTFTKRPYVGWKLL
MQQEKEVKIKLKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQSKEQRSKDDQYRKANMGHYQPLNYKPVSLDY
YLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   5119 GenBank   NZ_CP092268
Plasmid name   pD Incompatibility group   -
Plasmid size   30612 bp Coordinate of oriT [Strand]   26945..26965 [+]
Host baterium   Levilactobacillus brevis strain YSJ3

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -