Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104677 |
| Name | oriT_15|unnamed5  |
| Organism | Salmonella enterica subsp. enterica serovar Indiana strain 15 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP092263 (2714..2997 [-], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 247..253, 262..268 (CCCCTGG..CCAGGGG) 245..250, 253..258 (CGCCCC..GGGGCG) 119..127, 137..145 (GCGGTGTTG..CAACACCGC) 31..37, 42..48 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_15|unnamed5
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCTGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCTGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 5116 | GenBank | NZ_CP092263 |
| Plasmid name | 15|unnamed5 | Incompatibility group | ColRNAI |
| Plasmid size | 3272 bp | Coordinate of oriT [Strand] | 2714..2997 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Indiana strain 15 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |