Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104676
Name   oriT_pLp900-3 in_silico
Organism   Lactiplantibacillus plantarum strain Lp900
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP059171 (30967..30987 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pLp900-3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3346 GenBank   WP_204768840
Name   mobQ_Lp900_RS15650_pLp900-3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80520.05 Da        Isoelectric Point: 9.3243

>WP_204768840.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRRYFYARSVMPESFILTPKNAPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPIELSESEQKELLTKYVQENFVNQGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIDDTPTQHEGINSKRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKELLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETESEQTIFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKEVKINLKYTLMIHDDSLESLEHVDQGILEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQVNPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRILKHDGTKQLFLGECKVNPTIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPNY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   5115 GenBank   NZ_CP059171
Plasmid name   pLp900-3 Incompatibility group   -
Plasmid size   34890 bp Coordinate of oriT [Strand]   30967..30987 [+]
Host baterium   Lactiplantibacillus plantarum strain Lp900

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -