Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104667
• Name: oriT_pnunamed3
• Organism: Latilactobacillus curvatus strain ZJUNIT8
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP029969 (430..468 [-], 39 nt)
• oriT length: 39 nt
• IRs (inverted repeats): 1..6, 11..16 (CTTTAC..GTAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 39 nt

>oriT_pnunamed3
CTTTACGAATGTAAAGTATAGTGGGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_C0W45_RS10150_pnunamed3

• ID: 3341
• GenBank: WP_111447990
• Name: mobV_C0W45_RS10150_pnunamed3
• UniProt ID: _
• Length: 403 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 403 a.a.
• Molecular weight: 46987.78 Da
• Isoelectric Point: 7.5482

>WP_111447990.1 MULTISPECIES: MobV family relaxase [Latilactobacillus]
MSFVVARMQKMKAGNLVGMGNHNQRLTDNHSNKDIDTERSYLNYDLVNRTDNYKTDIQQFINENKSSSRA
VRKDAVLINEWIITSDNQFFKDKDDKEIKDFFDTAKSYFSDKFGDENIRYAQVHLDETTPHMHLGIVPFN
AEYKLSAKTLFNRQALQAVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEMTTTLEQRKS
EVLALSNDKTPTINKESLDLKDETKTVKVPSGETIGIGKLRHEFTKNEERKTGNVIIPESKLNALIQGYE
DLYKSNEQLKKYAETDLPKRIDYVKGKYKEVVRDYNDLADRFNNNLEKIDSLEKENKSLKNEIKGIYRGF
NQFMENTLGATVRQAEKLMNNLVSEIKEFVKGGEFEKIHRNETRTRDRDELSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 5106
• GenBank: NZ_CP029969
• Plasmid name: pnunamed3
• Incompatibility group: -
• Plasmid size: 4909 bp
• Coordinate of oriT [Strand]: 430..468 [-]
• Host baterium: Latilactobacillus curvatus strain ZJUNIT8

Cargo genes

• Drug resistance gene: lnu(A)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -