Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104638 |
| Name | oriT_FDAARGOS_1243|unnamed4  |
| Organism | Staphylococcus epidermidis strain FDAARGOS_1243 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP069477 (3438..3557 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGGA..TCCCCAA) 23..30, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_FDAARGOS_1243|unnamed4
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGATAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGATAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3332 | GenBank | WP_145366607 |
| Name | Relaxase_I6J73_RS12155_FDAARGOS_1243|unnamed4 |
UniProt ID | _ |
| Length | 335 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 335 a.a. Molecular weight: 38435.07 Da Isoelectric Point: 6.2979
>WP_145366607.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLELTEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDDIREAIDQSTATNMDEFKDHLSQYGIKIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREDDNDIQPKRPTSNRDESTERDTGVTQADW
EQFAQDTNELERSRQAAESARLAHEKARRDREERAREKQASRTIIDNDRDHGLEL
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLELTEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDDIREAIDQSTATNMDEFKDHLSQYGIKIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREDDNDIQPKRPTSNRDESTERDTGVTQADW
EQFAQDTNELERSRQAAESARLAHEKARRDREERAREKQASRTIIDNDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 5077 | GenBank | NZ_CP069477 |
| Plasmid name | FDAARGOS_1243|unnamed4 | Incompatibility group | - |
| Plasmid size | 6266 bp | Coordinate of oriT [Strand] | 3438..3557 [+] |
| Host baterium | Staphylococcus epidermidis strain FDAARGOS_1243 |
Cargo genes
| Drug resistance gene | vga(A)LC |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |