Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104637 |
| Name | oriT_FDAARGOS_1245|unnamed  |
| Organism | Staphylococcus aureus strain FDAARGOS_1245 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP069566 (4960..5219 [+], 260 nt) |
| oriT length | 260 nt |
| IRs (inverted repeats) | 237..242, 252..257 (TTTTTA..TAAAAA) 191..198, 203..210 (CTATCATT..AATGATAG) 175..180, 184..189 (TCTGGC..GCCAGA) 24..30, 44..50 (CTTTTTT..AAAAAAG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 260 nt
>oriT_FDAARGOS_1245|unnamed
AAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC
AAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 5076 | GenBank | NZ_CP069566 |
| Plasmid name | FDAARGOS_1245|unnamed | Incompatibility group | - |
| Plasmid size | 32653 bp | Coordinate of oriT [Strand] | 4960..5219 [+] |
| Host baterium | Staphylococcus aureus strain FDAARGOS_1245 |
Cargo genes
| Drug resistance gene | blaZ, aph(3')-III, msr(A), mph(C), qacA |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |