Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104617
Name   oriT_JC009|unnamed in_silico
Organism   Vibrio sp. JC009
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP092108 (6222..6250 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..10, 14..22  (CAGTTTCTC..GAGAAACTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_JC009|unnamed
CCAGTTTCTCGCAGAGAAACTGATAAGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3319 GenBank   WP_160151381
Name   MobA_MobL_L3Q72_RS23385_JC009|unnamed insolico UniProt ID   _
Length   450 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 450 a.a.        Molecular weight: 53610.88 Da        Isoelectric Point: 8.4078

>WP_160151381.1 MULTISPECIES: MobA/MobL family protein [Gammaproteobacteria]
MAIYHLNVRYCSKSKGQSAQAKNEYINRNDKYSKRLDDLQFSGFGNMPKFAENNPQKFWQASDIYERANA
RVCTEIVFALPRELNLEQQQELVQSFINSTVNSERNKLPYSFAIHNDKANNNPHCHLIFSERQLDGIERS
EEQFFKRANSKNAELGGTKKTADFRDRDFIKAVRKTWSEQANFALEKHGHTARIDERSYQEQGIDKEPRA
RLDRVTWQELQRLEENAEFFAEVIERKQNQIEQEKVEITKNTPKNTLEPFSQKDDIKHEQIKKVAENRKE
SVSQAEFDRFLIENWLEPNQKFINACEKRAKMRSEWEQYGKDLERINSDYKALNEKKQGLFGLWETKEQK
QTKQELESEYYRIKALRKEKAEEHDTYNDKINQYEKDTIEPLRKQIEQMKADNPHLEQRNHQQLMAMKFK
GLEQWAKDKLQREQSQKRQISHSKDSDLSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(21-211)


  Protein structure



No available structure.




Host bacterium

ID   5056 GenBank   NZ_CP092108
Plasmid name   JC009|unnamed Incompatibility group   -
Plasmid size   6305 bp Coordinate of oriT [Strand]   6222..6250 [-]
Host baterium   Vibrio sp. JC009

Cargo genes

Drug resistance gene   floR
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -