Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104616
Name   oriT_pK521-NR2 in_silico
Organism   Aeromonas media strain K521
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP118996 (3955..3990 [+], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      30..31
Conserved sequence flanking the
  nic site    		  GTGCGCCCTC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_pK521-NR2
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3318 GenBank   WP_270824988
Name   MobA_MobL_PYU99_RS21650_pK521-NR2 insolico UniProt ID   _
Length   705 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 705 a.a.        Molecular weight: 77923.92 Da        Isoelectric Point: 8.6262

>WP_270824988.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Aeromonas]
MAIFHLAAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVGNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGGENPHCHLMMSERKNDGVERKK
DQWFSRYNPKNPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRQDSRGQHKAGWRVGDPAGQSRDGVGRHSRGTGQGSRGTGQGSREGRSRSESVGMADFRT
HLDGFSAVYASAADRIVALAGPGTQDDKGGGSVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELERKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKTKREY
PTLKM

  Protein domains


Predicted by InterproScan.

RepB DNA-primase from phage plasmid (RepB_primase)

(419-591)

MobA/MobL family (MobA_MobL)

(21-220)


  Protein structure



No available structure.




Host bacterium

ID   5055 GenBank   NZ_CP118996
Plasmid name   pK521-NR2 Incompatibility group   IncQ1
Plasmid size   5018 bp Coordinate of oriT [Strand]   3955..3990 [+]
Host baterium   Aeromonas media strain K521

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -