Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 104594 |
Name | oriT_STLIN_3|unnamed1 |
Organism | Klebsiella pneumoniae strain STLIN_3 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP058759 (112161..112209 [+], 49 nt) |
oriT length | 49 nt |
IRs (inverted repeats) | 6..13, 16..23 (GCAAAATT..AATTTTGC) |
Location of nic site | 32..33 |
Conserved sequence flanking the nic site |
GGTGTGGTGA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 49 nt
>oriT_STLIN_3|unnamed1
AATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
AATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 3305 | GenBank | WP_047665818 |
Name | traI_HZT06_RS25585_STLIN_3|unnamed1 | UniProt ID | A0A0S1TL23 |
Length | 1753 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 1753 a.a. Molecular weight: 190754.90 Da Isoelectric Point: 6.3385
>WP_047665818.1 MULTISPECIES: conjugative transfer relaxase/helicase TraI [Enterobacterales]
MMSIGSVKSAGSAGNYYTDKDNYYVIGSMDERWQGKGAEALGIDGKAVDKALFTELLKGKLPDGSDLTRI
QDGANKHRPGYDLTFSAPKSVSVMAMLGGDKRLIDAHNQAVTEAVRQLETLAATRVMTDGKSETVLTGNL
IVAKFNHDTNRNQEPQIHTHAVVINATQNGDKWQSLGTDKIGKTGFIENVYANQIAFGKLYREAFKPLVE
KLGYETEVVGKHGMWEMKGVPVEPFSTRSQEVREAAGPDASLKSRDVAALDTRKSKDAIDPAEKMVEWMN
TLKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLE
AKDGVFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRQNHVSVTPDAFVVRQVP
FSDAVSVLAQDRPVMGIVSGQGGATGQRERVAELTLMAREQGRDVHILAADNRSRDFLAGDVRLAGETVT
GKSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTY
RWQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEKD
TTITALTPVWLDSKSRGVRDYYREGMVMERWDPETRTHDRFVIDRVTGSSNMLTLKDREGVRLDLKVSAV
DSQWTLFRADTLPVAEGERLAVLGKIPDTRLKGGESITVMKVEDGQLTVQRPGQKTTQTLAMGAGVFDGI
KIGHGWVESPGRSVSETATVFASVTQRELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTAFSVVSE
QLKTRSGETDLDAAIAQQKAGLRTPAEQAIHLAIPLLESEKLTFSRPQLLATALETGGGKVSMADIDTTI
QAQIRSGQLLNVPVAHGYGNDLLISRQTWDAEKSILTHVLEGKDAVAPLMDRVPASLMTDLTAGQRAATR
MILESTDRFTVVQGYAGVGKTTQLRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVDARTTASFLH
DTQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIVAGGGRAVSSGDNDQLQPIAPGQPFRLTQQR
SAADVAIMKEIVRQMPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGAWAPGSSVVEFTPKQEKAIE
KALSEGKTLPEGQPATLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITL
PVLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKANQLITLTDSEGKERYISPREASAEGVTL
YRQEKITVSQGDRMRFSKSDLERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKADQAQQHIDLAYAIT
AHGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDNREGWIKAIKHSPEKATAHDILE
PRNDRAVKTADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGI
WLSPLTDRDGRLEAIGGEGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDR
PWNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEP
ADRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEEAIQQVASERLQRERLQAVERDMVRDLNREKTL
GGD
MMSIGSVKSAGSAGNYYTDKDNYYVIGSMDERWQGKGAEALGIDGKAVDKALFTELLKGKLPDGSDLTRI
QDGANKHRPGYDLTFSAPKSVSVMAMLGGDKRLIDAHNQAVTEAVRQLETLAATRVMTDGKSETVLTGNL
IVAKFNHDTNRNQEPQIHTHAVVINATQNGDKWQSLGTDKIGKTGFIENVYANQIAFGKLYREAFKPLVE
KLGYETEVVGKHGMWEMKGVPVEPFSTRSQEVREAAGPDASLKSRDVAALDTRKSKDAIDPAEKMVEWMN
TLKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLE
AKDGVFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRQNHVSVTPDAFVVRQVP
FSDAVSVLAQDRPVMGIVSGQGGATGQRERVAELTLMAREQGRDVHILAADNRSRDFLAGDVRLAGETVT
GKSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTY
RWQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEKD
TTITALTPVWLDSKSRGVRDYYREGMVMERWDPETRTHDRFVIDRVTGSSNMLTLKDREGVRLDLKVSAV
DSQWTLFRADTLPVAEGERLAVLGKIPDTRLKGGESITVMKVEDGQLTVQRPGQKTTQTLAMGAGVFDGI
KIGHGWVESPGRSVSETATVFASVTQRELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTAFSVVSE
QLKTRSGETDLDAAIAQQKAGLRTPAEQAIHLAIPLLESEKLTFSRPQLLATALETGGGKVSMADIDTTI
QAQIRSGQLLNVPVAHGYGNDLLISRQTWDAEKSILTHVLEGKDAVAPLMDRVPASLMTDLTAGQRAATR
MILESTDRFTVVQGYAGVGKTTQLRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVDARTTASFLH
DTQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIVAGGGRAVSSGDNDQLQPIAPGQPFRLTQQR
SAADVAIMKEIVRQMPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGAWAPGSSVVEFTPKQEKAIE
KALSEGKTLPEGQPATLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITL
PVLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKANQLITLTDSEGKERYISPREASAEGVTL
YRQEKITVSQGDRMRFSKSDLERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKADQAQQHIDLAYAIT
AHGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDNREGWIKAIKHSPEKATAHDILE
PRNDRAVKTADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGI
WLSPLTDRDGRLEAIGGEGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDR
PWNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEP
ADRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEEAIQQVASERLQRERLQAVERDMVRDLNREKTL
GGD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
ID | 3245 | GenBank | WP_013023832 |
Name | traD_HZT06_RS25590_STLIN_3|unnamed1 | UniProt ID | _ |
Length | 770 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 770 a.a. Molecular weight: 85974.10 Da Isoelectric Point: 5.1149
>WP_013023832.1 MULTISPECIES: type IV conjugative transfer system coupling protein TraD [Enterobacterales]
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPADTNSHAGEQPEPVSQPA
PADMTVSPAPVKAPPTTKMPAEEPSVRATEPSVLRLTTVPLIKPKAAAAAAAAATASSAGTPAAAAGGTE
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDYVEIGGNF
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPADTNSHAGEQPEPVSQPA
PADMTVSPAPVKAPPTTKMPAEEPSVRATEPSVLRLTTVPLIKPKAAAAAAAAATASSAGTPAAAAGGTE
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDYVEIGGNF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 83947..112767
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HZT06_RS25590 (HZT06_25530) | 83947..86259 | - | 2313 | WP_013023832 | type IV conjugative transfer system coupling protein TraD | virb4 |
HZT06_RS25595 (HZT06_25535) | 86386..87075 | - | 690 | WP_013023831 | hypothetical protein | - |
HZT06_RS25600 (HZT06_25540) | 87268..87999 | - | 732 | WP_013023830 | conjugal transfer complement resistance protein TraT | - |
HZT06_RS25605 (HZT06_25545) | 88185..88718 | - | 534 | WP_014343486 | conjugal transfer protein TraS | - |
HZT06_RS25610 (HZT06_25550) | 88721..91570 | - | 2850 | WP_013609534 | conjugal transfer mating-pair stabilization protein TraG | traG |
HZT06_RS25615 (HZT06_25555) | 91570..92949 | - | 1380 | WP_014343487 | conjugal transfer pilus assembly protein TraH | traH |
HZT06_RS25620 (HZT06_25560) | 92927..93370 | - | 444 | WP_013023828 | F-type conjugal transfer protein TrbF | - |
HZT06_RS25625 (HZT06_25565) | 93416..93973 | - | 558 | WP_013214031 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
HZT06_RS25630 (HZT06_25570) | 93945..94184 | - | 240 | WP_004144400 | type-F conjugative transfer system pilin chaperone TraQ | - |
HZT06_RS25635 (HZT06_25575) | 94195..94947 | - | 753 | WP_048337413 | type-F conjugative transfer system pilin assembly protein TraF | traF |
HZT06_RS25640 (HZT06_25580) | 94968..95294 | - | 327 | WP_004152676 | hypothetical protein | - |
HZT06_RS25645 (HZT06_25585) | 95307..95555 | - | 249 | WP_004152675 | hypothetical protein | - |
HZT06_RS25650 (HZT06_25590) | 95533..95787 | - | 255 | WP_004152674 | conjugal transfer protein TrbE | - |
HZT06_RS25655 (HZT06_25595) | 95819..97774 | - | 1956 | WP_013023827 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
HZT06_RS25660 (HZT06_25600) | 97833..98471 | - | 639 | WP_011977786 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
HZT06_RS25665 (HZT06_25605) | 98484..99473 | - | 990 | WP_009309872 | conjugal transfer pilus assembly protein TraU | traU |
HZT06_RS25670 (HZT06_25610) | 99470..99859 | - | 390 | WP_004194992 | hypothetical protein | - |
HZT06_RS25675 (HZT06_25615) | 99901..100527 | - | 627 | WP_009309871 | type-F conjugative transfer system protein TraW | traW |
HZT06_RS25680 (HZT06_25620) | 100527..100916 | - | 390 | WP_004197815 | type-F conjugative transfer system protein TrbI | - |
HZT06_RS25685 (HZT06_25625) | 100916..103555 | - | 2640 | WP_013023824 | type IV secretion system protein TraC | virb4 |
HZT06_RS25690 (HZT06_25630) | 103627..104025 | - | 399 | WP_013609531 | hypothetical protein | - |
HZT06_RS25695 (HZT06_25635) | 104401..104805 | - | 405 | WP_004197817 | hypothetical protein | - |
HZT06_RS25700 (HZT06_25640) | 104872..105183 | - | 312 | WP_015344986 | hypothetical protein | - |
HZT06_RS25705 (HZT06_25645) | 105184..105402 | - | 219 | WP_015344987 | hypothetical protein | - |
HZT06_RS25710 (HZT06_25650) | 105508..105918 | - | 411 | WP_009309869 | hypothetical protein | - |
HZT06_RS25715 (HZT06_25655) | 106050..106634 | - | 585 | WP_013023822 | type IV conjugative transfer system lipoprotein TraV | traV |
HZT06_RS25720 (HZT06_25660) | 106748..108172 | - | 1425 | WP_004194260 | F-type conjugal transfer pilus assembly protein TraB | traB |
HZT06_RS25725 (HZT06_25665) | 108172..108912 | - | 741 | WP_013023821 | type-F conjugative transfer system secretin TraK | traK |
HZT06_RS25730 (HZT06_25670) | 108899..109465 | - | 567 | WP_004144423 | type IV conjugative transfer system protein TraE | traE |
HZT06_RS25735 (HZT06_25675) | 109485..109790 | - | 306 | WP_004144424 | type IV conjugative transfer system protein TraL | traL |
HZT06_RS25740 (HZT06_25680) | 109804..110172 | - | 369 | WP_004194426 | type IV conjugative transfer system pilin TraA | - |
HZT06_RS27150 (HZT06_25685) | 110241..110441 | - | 201 | WP_004194116 | TraY domain-containing protein | - |
HZT06_RS25745 (HZT06_25690) | 110527..111228 | - | 702 | WP_004194113 | hypothetical protein | - |
HZT06_RS25750 (HZT06_25695) | 111458..111850 | - | 393 | WP_004194114 | conjugal transfer relaxosome DNA-binding protein TraM | - |
HZT06_RS25755 (HZT06_25700) | 112282..112767 | + | 486 | WP_001568108 | transglycosylase SLT domain-containing protein | virB1 |
HZT06_RS25760 (HZT06_25705) | 112800..113129 | - | 330 | WP_011977736 | DUF5983 family protein | - |
HZT06_RS25765 (HZT06_25710) | 113162..113983 | - | 822 | WP_004152492 | DUF932 domain-containing protein | - |
HZT06_RS25770 (HZT06_25715) | 114791..115999 | + | 1209 | WP_015344990 | IS256 family transposase | - |
HZT06_RS25775 (HZT06_25720) | 116135..116548 | - | 414 | WP_013023817 | helix-turn-helix domain-containing protein | - |
HZT06_RS25780 (HZT06_25725) | 116549..116827 | - | 279 | WP_004152721 | helix-turn-helix transcriptional regulator | - |
HZT06_RS25785 (HZT06_25730) | 116817..117137 | - | 321 | WP_004152720 | type II toxin-antitoxin system RelE/ParE family toxin | - |
HZT06_RS25790 (HZT06_25735) | 117218..117442 | - | 225 | WP_004152719 | hypothetical protein | - |
HZT06_RS25795 (HZT06_25740) | 117453..117665 | - | 213 | WP_013023815 | hypothetical protein | - |
Host bacterium
ID | 5033 | GenBank | NZ_CP058759 |
Plasmid name | STLIN_3|unnamed1 | Incompatibility group | IncFII |
Plasmid size | 141426 bp | Coordinate of oriT [Strand] | 112161..112209 [+] |
Host baterium | Klebsiella pneumoniae strain STLIN_3 |
Cargo genes
Drug resistance gene | sul2, aph(3'')-Ib, aph(6)-Id, aph(3')-Ia, aac(3)-IId, floR, tet(A), mph(A), sul1, qnrB91, qacE, aadA16, dfrA27, ARR-3, aac(6')-Ib-cr, blaTEM-1B, blaCTX-M-3, qnrS1 |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | AcrIE9 |