Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104556
Name   oriT_STLEFF_34|unnamed6 in_silico
Organism   Shigella flexneri strain STLEFF_34
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP058845 (1555..1588 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_STLEFF_34|unnamed6
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3284 GenBank   WP_000024818
Name   mobV_HZT26_RS24645_STLEFF_34|unnamed6 insolico UniProt ID   A0A5W5SJI7
Length   322 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 322 a.a.        Molecular weight: 36743.68 Da        Isoelectric Point: 10.3759

>WP_000024818.1 MULTISPECIES: MobV family relaxase [Gammaproteobacteria]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCSVSKSTDQAMGRVRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQ
MTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure


Source ID Structure
AlphaFold DB A0A5W5SJI7


Host bacterium

ID   4995 GenBank   NZ_CP058845
Plasmid name   STLEFF_34|unnamed6 Incompatibility group   -
Plasmid size   2028 bp Coordinate of oriT [Strand]   1555..1588 [-]
Host baterium   Shigella flexneri strain STLEFF_34

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -