Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104555
Name   oriT_STLEFF_34|unnamed5 in_silico
Organism   Shigella flexneri strain STLEFF_34
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP058844 (2377..2409 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      9..14, 18..23  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_STLEFF_34|unnamed5
GGGCACGGCTTTACGAAGTAAAGTGTAGTGAGT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3283 GenBank   WP_240763297
Name   mobV_HZT26_RS24635_STLEFF_34|unnamed5 insolico UniProt ID   _
Length   330 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 330 a.a.        Molecular weight: 37688.48 Da        Isoelectric Point: 10.3011

>WP_240763297.1 MobV family relaxase [Shigella flexneri]
MSDAPNFAILRTQKLKHLASVRRSLKHSFREQDTPNADQSLTPENSHYGANSTAEAMAEVQARLPEKRRK
DAVLAIEYLVTASPEAMHGKSREEQDAYFADSLEWLRERHGAENVVYAGVHRDETTPHMYAYVVPLDRDT
GRLNAKKWLGGSKALNQMQTEFADRIGQRHGLERGIERSKARHQTIRQFYGNLEAADRQQIAVDPKQVEP
QTLKKGLFTKEVESPEMVAARLSKEITQANRATIEKASVSAQERRSAKALRDTAKEQQKRLQTLQEPFKG
LSKDQMAEVLKMAVGMQRENEQAKEAKKTQILEKFQAKRERERNDRSRGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(6-190)


  Protein structure



No available structure.




Host bacterium

ID   4994 GenBank   NZ_CP058844
Plasmid name   STLEFF_34|unnamed5 Incompatibility group   -
Plasmid size   2605 bp Coordinate of oriT [Strand]   2377..2409 [-]
Host baterium   Shigella flexneri strain STLEFF_34

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -