Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104547 |
| Name | oriT_STLIN_6|unnamed4  |
| Organism | Shigella flexneri strain STLIN_6 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP058794 (2029..2312 [+], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 247..253, 262..268 (CCCCTGG..CCAGGGG) 245..250, 253..258 (CGCCCC..GGGGCG) 183..189, 197..203 (TATAAAA..TTTTATA) 126..131, 144..149 (CGGCGC..GCGCCG) 31..38, 41..48 (GCAAAAAC..GTTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_STLIN_6|unnamed4
GTTCTCATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGAAAAATTAGTTTCTCTTGCTCTCTTTGCGATATTTAAAAAAGCGGTGCCGGCGCAGCTACAACACCGCGCCGACACCGCTTTGTAGGGGGGGTACTGACTATTTTTATAAAAAACATCATTTTATATCAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
GTTCTCATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGAAAAATTAGTTTCTCTTGCTCTCTTTGCGATATTTAAAAAAGCGGTGCCGGCGCAGCTACAACACCGCGCCGACACCGCTTTGTAGGGGGGGTACTGACTATTTTTATAAAAAACATCATTTTATATCAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4986 | GenBank | NZ_CP058794 |
| Plasmid name | STLIN_6|unnamed4 | Incompatibility group | ColRNAI |
| Plasmid size | 3257 bp | Coordinate of oriT [Strand] | 2029..2312 [+] |
| Host baterium | Shigella flexneri strain STLIN_6 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |